Morphological, Molecular Characterization and Breeding for Biotic and
Abiotic Stress in Mango (Mangifera indica L.)
M.R. Dinesh, C. Vasugi and K.V. Ravishankar
Division of Fruit Crops
Indian Institute of Horticultural Research
Bangalore-89
India
Keywords: abiotic, biotic, breeding, characterization, mango, markers, morphological,
molecular
Abstract
Mango (Mangifera indica L.) is the most important fruit crop in India having
socio-economic significance. Morphological characterization involves the study of
development of form, structure with attempts being made to interpret these on the
basis of similarity and origin. Owing to the high heterozygosity and seedling
propagation, nomenclature ambiguity is one of the main impediments in
classification of mango. Under the morphological characterization the widely used
keys are the ones developed by ‘Bioversity International’ which has
54 characteristics. Morphological characterization has assisted in the classification
of cultivars but ambiguity in nomenclature persists due to its limitation by way of
minor differences between the characteristics. Molecular markers are used to
measure diversity at DNA level and are not much influenced by environmental
conditions like morphological markers. Classification of cultivars and screening of
cultivars for biotic and abiotic stress would help in selecting the parents for the
hybridization program and development of recombinants resistant to various biotic
and abiotic stresses. Breeding attempts for abiotic stress made in mango have
centered on the rootstock improvement in few places where soil salinity is a
problem. Screening of polyembryonic cultivars has shown the cultivars ‘Olour’ and
‘Bappakkai’ to be tolerant compared to others.
INTRODUCTION
Mango (Mangifera indica L.) is the most important fruit crop in India having
socio-economic significance. It is known as king of fruits owing to the delicious quality
of fruit rich in vitamins and minerals. The northeastern region is the centre of diversity for
several important native fruits including mango. Mango is highly cross-pollinated and
heterozygous, which has resulted in enormous variability over the years, which in turn has
resulted in nomenclature ambiguity. A cultivar that is grown in a particular region is
known by different names in other regions. In the case of mango, morphological keys
have been developed by IPGRI (2006). One of the problems with morphological
characterization is the expression of characters by a cultivar under a set of environment
i.e., the genotype × environment interaction. This can mislead the results in the case of
morphological characterization as a native to one region may not express in the same way
as it expresses in its place of origin. However, to conclusively prove that two cultivars are
synonyms, characterization at the genetic level would be more helpful. It is widely
accepted now that molecular characterization is fairly accurate and would help in
removing this ambiguity.
MORPHOLOGICAL CHARACTERIZATION
Morphological characterization involves the study of development of form,
structure with attempts being made to interpret these on the basis of similarity and origin.
It is likely that similar underlying causes of genetics, physiology, or response to the
environment have led to this similarity in appearance. Scientific investigation into these
causes can lead to one of two insights. One is ‘Homology’ – the structure is similar
Proc. of the Global Conference on Augmenting Production and
Utilization of Mango: Biotic and Abiotic Stresses
Eds.: H. Ravishankar et al.
Acta Hort. 1066, ISHS 2015
37
between the two species because of shared ancestry and common genetics and
‘Convergence’ – the structure is similar between the two species because of independent
adaptation to common environmental pressures. Morphological, agronomical as well as
biochemical parameters (Rick and Holle, 1990; Weber and Wricke, 1994; Kaemmer et
al., 1995) have been widely used in the evaluation of various crops. Exploitation of such
traits increases our knowledge on the genetic variability and strongly facilitates breeding
for wider geographic adaptability.
Mango has a long history of domestication, due to the high heterozygosity and
seedling propagation, nomenclature ambiguity is one of the main impediments in
classification. Several studies have been conducted on morphological descriptions of
mango from time to time (Burns and Prayag, 1921; Mukherjee, 1948; Naik and Gangolly,
1950; Singh and Singh, 1956; Gangolly et al., 1957; Rajan et al., 2001; Yeshitela and
Nessel, 2003; Desai and Dhander, 2000; Dinesh and Vasugi, 2002). Yeshitela and Nessel
(2003) characterized 75 mango ecotypes based on the morphological traits. Under the
morphological characterization the widely used keys are the ones developed by the
‘Bioversity International’ which has 54 characteristics.
MOLECULAR CHARACTERIZATION
Morphological characterization has assisted in the classification of cultivars in
mango. However, ambiguity persists due to its limitation in identifying cultivars with
little difference. Molecular markers are used to measure diversity at DNA level and are
not much influenced by environmental conditions like morphological markers. The
discovery of molecular markers has led to the detailed genetic analysis and approaches to
improvement of crop plants. It is differentiated into protein markers, which were
discovered first and DNA based markers. Recent advances made with the molecular
characterization helped further in clearing this ambiguity.
Biochemical markers have played an important role in the beginning. Many
researchers have used biochemical markers for identifying cultivars in mango (Schnell
and Knight, 1992; Degani et al., 1990; Gan et al., 1981; Truscott et al., 1994). Isozymes
as genetic markers have been proved to be reliable, consistent and essentially unaffected
by environmental conditions (Bailey, 1983; Torres and Bergh, 1980). However, isozymes
can be affected by stages of development and tissue used for extraction (Feret and
Bergmann, 1976).
The DNA based markers like RFLP and RAPD provide excellent tools to study
the genetic diversity, eliminate duplicates in germplasm, study relationships, gene
tagging, genome mapping, PVR (Plant Varietal Rights) purposes, etc. The success of
molecular markers in characterizing and analyzing genetic diversity in mango has been
demonstrated by a number of studies (Schnell and Knight, 1993; Adato et al., 1995;
Schnell et al., 1995; Lopez-Valenzuela et al., 1997; Ravishankar et al., 2000;
Hemanthkumar et al., 2001). The RAPD technique was used by Schnell et al. (1995),
Ravishankar et al. (2000) and Hemanthkumar et al. (2001) for cultivar identification and
analysis of genetic relatedness in mango. Schnell et al. (1995), found the maternal
halfsibs to cluster together indicating the usefulness of RAPD markers in studying the
genetic relationships.
In 1990, PCR based DNA marker called Random Amplification of Polymorphic
DNA (RAPD) was developed (Williams et al., 1990; Welsh and McClelland, 1990). This
RAPD technique was first used in mango by Schnell and Knight (1993). In their study,
nine Mangifera species were analyzed and compared with traditional taxonomic
relationships based on morphological characters. Later, Schnell et al. (1995) adopted
RAPD analysis for identification of cultivars and to assess genetic relationship among
cultivars. DNA from 25 cultivars was amplified using 80, 10 mer random primers. None
of these primers amplified unique band pattern for each of the cultivars. However,
10 different combinations of 2 primers produced unique fingerprints of each of cultivars.
Dendrogram analysis showed that maternal half sibs cluster together indicating usefulness
of RAPD markers in genetic relatedness study. Later Lopez-Valenzuela et al. (1997) used
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40 random primers, to assess genetic relatedness among 15 mango cultivar collected from
Mexico, The Philippines, Florida and Reunion. Dendrogram analysis of RAPD markers
showed 4 major groups, clearly classifying genotypes according to their geographic
origin. This study also identified RAPD markers specific to polyembryonic and monoembryonic cultivars. Later in a study, RAPD markers were used to show diverse genetic
base of Indian poly-embryonic and mono-embryonic mango cultivars (Ravishankar et al.,
2004). RAPD analysis was done using 18 mango cultivars from different parts of India
for RAPD analysis. The cluster analysis of RAPD markers generated showed that mango
cultivars from a particular region group together indicating high degree of genetic
relatedness among them (Ravishankar et al., 2000). Later there were several genetic
diversity studies on Indian mango cultivars using RAPD markers and they demonstrated
high degree of diversity in Indian mango germplasm (Karihaloo et al., 2003; Bajpai et al.,
2008). Later a few studies employed another PCR based marker; inter-simple sequence
repeats (ISSR) to study genetic diversity and genetic relatedness among mango genotypes
(Pandit et al., 2007; Bajpai et al., 2008). Eiadthong et al. (1999) utilized anchored simplesequence repeat markers to analyze 22 mango cultivars. They were able to distinguish
genotypes, but were unable to find markers unique to either mono-embryonic or polyembryonic types.
Adato et al. (1995) used radioactively labelled Jeffery’s minisatellite probes and
synthetic minisatellites for identification of mango cultivars. Jeffery’s minisatellite probe
33.6 was most useful, highly polymorphic and generated specific pattern for each of the
20 mango cultivars used. Kashkush et al. (2001) utilized amplified fragment-length
polymorphisms (AFLP) to estimate genetic relationships between 16 cultivars and
7 rootstock cultivars. They also analyzed 29 progenies from the cross of ‘Tommy Atkins’
and ‘Keitt’ and produced a crude linkage map that identified 13 of the 20 linkage groups.
Simple Sequence Repeats
Markers have been used successfully in characterization of many crop species.
SSR markers are highly accurate and amenable for large scale use in germplasm
characterization. In recent years, there are a few efforts to develop SSR markers for
mango. So far nearly 105 SSR markers are available for mango. However, this is a very
small number for mango. Viruel et al.(2005) developed the first reported set of
16 microsatellite markers for mango, of which 14 produced the expected one or two
amplification products per genotype. These 14 microsatellites were used to evaluate
28 mango genotypes. Discrimination of all 28 genotypes was possible and the average
number of alleles per locus was 5.3. Schnell et al. (2005) developed a second set of
15 microsatellite markers and analyzed 59 Florida cultivars and 4 related species. Two of
the microsatellites were monomorphic among the Florida cultivars: the other 13 had an
average number of alleles per locus of 4.2 with PTC values varying from 0.21 to 0.63.
Duval et al. (2005) developed 28 SSR primer pairs, they produced polymorphic
amplification products for a diversity sample including 15 mango cultivars and two
accessions from the related species Mangifera laurina and Mangifera applanata.
19 simple sequence repeat (SSR) loci with clear scorable patterns were chosen to study
diversity in the mango germplasm bank of Guadalupe (FWI). The number of alleles
ranged from 3 to 13 with observed levels of heterozygosity ranging from 0.059 to 0.857.
Honsho et al. (2005) developed 6 microsatellite markers for mango using a microsatelliteenriched genomic library. They were characterized using 36 cultivars collected mainly in
Thailand. The observed and expected heterozygosity ranged from 0 to 0.83 and from 0.29
to 0.73, respectively. The number of putative alleles was two to six. Recently at IIHR, we
have developed 36 microsatellite markers and validated using 30 mango cultivars
(Ravishankar et al., 2011). The number of alleles ranged from 3 to 19 with an average of
9.2 alleles per locus. Polymorphic information content values ranged from 0.185 to 0.920
with a mean of 0.687. The total value for the probability of identity was 2.42×10-31. We
have also demonstrated cross species amplification in 5 related species, M. odorata,
M. anadamanica, M. zeylanica, M. camptosperma, and M. griffithii, showing their
39
potential utility across species. Fourteen selected SSR markers (with high PIC) have been
employed for molecular characterization of Indian mango cultivars (both at IIHR,
Bangalore and CISH, Lucknow). So far nearly 400 mango cultivars have been
characterized using 14 SSR markers. Genetic analysis showed that there are two major
groups among Indian cultivars. In addition to molecular characterization, SSR markers
have been used for pedigree analysis. Pedigree analysis of Florida mango cultivars
showed that when compared by origin, the Florida cultivars were more closely related to
Indian than to Southeast Asian cultivars (Schnell et al., 2006).
Apart from molecular characterization of mango cultivars, DNA markers have
been employed for phylogenetic studies of different Mangifera species. The phylogenetic
relationship of 13 Mangifera species collected in Thailand was examined using cpDNARFLP technique. Based on the analysis of results, these species were classified into two
groups. The first group consisted of M. indica and M. sylvatica, and the second group
consisted of M. caloneura, M. cochinchinensis, M. collina, M. flava, M. foetida,
M. gedebe, M. griffithii, M. macrocarpa, M. oblongifolia, M. odorata, and M. pentandra
(Eiadthong et al., 1999). AFLP technique was employed to study phylogenetic
relationship among 10 Mangifera species. Results showed that the common mango
(Mangifera indica) was closely related to M. sylvatica, M. laurina and M. oblongifolia
(Eiadthong et al., 2000). In our center, we have done analysis of chloroplast and its
markers among M. indica, M. anandamanica, M. griffiti, and M. odorata. The results
generated shows that M. anadamanica forms a different group indicating that it may not
belong to the subgenus Mangifera.
BREEDING FOR BIOTIC AND ABIOTIC STRESS
Mango being perennial in nature, is subjected to several biotic stresses like pests
and diseases and abiotic stresses like soil and environmental factors. The variability
among the cultivars being very high, there is always scope for locating a source of
resistance. The polyembryonic cultivars, for which variability is less and which are
generally seen in regions of high rainfall should be screened for these stresses. There is
also a need for creating variability in these cultivars, as these would help in improving the
quality in these types. Identification of zygotic and nucellar embryony using markers
would help in selecting new recombinants. However, as a prelude, there is an urgent need
for evaluating the wide array of germplasm. It is of paramount importance to study the
inheritance pattern of various quantitative traits in these cultivars. The breeding strategy
that needs to be adopted is discussed hereunder.
Genetical Studies – Basis for Combining Resistance and Quality
The genetical studies to derive at the heritability of the different characteristics
would help us in choosing the parents to develop recombinants which may be resistant to
some of the biotic and abiotic stress as coupled with tolerance we need better quality.
Hence, these studies act as a prelude to the breeding of cultivars. However, the fact
remains that mango is highly heterozygous and progeny performance cannot be predicted.
Lavi et al. (1989) observed in the distribution of different traits in seedlings derived from
open-pollination (where the pollen parent is unknown) that there is no maternal effect on
juvenile period and fertility, there is a slight effect of the female parent on fruit taste and
size and there is a maternal parent effect on harvest season and fruit color. Varied reports
are available on the inheritance of pulp color; that it is governed by additive gene action is
one report by Sharma (1987), but Iyer (1991), observed yellow pulp color to be dominant
over orange-yellow. The inheritance of skin color seems to be mediated by a number of
loci as observed by gradation in the color (Sharma, 1987; Iyer and Subramanyam, 1987).
Dinesh (2003) observed that heritability is low and the chances of hybrid vigour
manifesting for the characters in the F1 generation are bright. Selection of progenies can
be made based on fruit size i.e., medium sized fruits will have good TSS and selecting big
sized fruits will bring down the TSS. It was also noticed that for the traits studied,
phenotypic coefficient of variation was more than the genotypic coefficient emphasizing
40
the greater manifestation of characters and lesser influence of environment.
The genetic studies in mango carried out earlier showed that red colored cultivars
when crossed with green colored cultivars resulted in the progenies having gradation of
colors, which indicated that it is controlled by a number of loci (Sharma, 1987; Iyer,
1991; Iyer and Subramanyam, 1987). The progeny population from the combination
‘Alphonso’ × ‘Banganapalli’, ‘Alphonso’ × ‘Janardhan Pasand’, ‘Raspuri’ × ‘Neelum’,
‘Alphonso’ × ‘Neelum’, ‘Alphonso’ × ‘Kerala Dwarf’, ‘Amrapali’ × ‘Arka Anmol’ was
observed to have gradations in fruit skin color. The cultivars ‘Janardhan Pasand’ as male
parent has imparted skin color to the progenies (Table 1). The role of heterozygosity and
the number of loci controlling skin color can be gauged from the fact that even the
progenies from the combination ‘Alphonso’ and ‘Neelum’ has resulted in attractive
colored fruits, same is true for the progenies of the combination ‘Alphonso’ ×
‘Banganapalli’. However, it is to be mentioned here that when cultivars like ‘Amrapali’
and ‘Arka Anmol’ were used, none of the progenies had attractive skin color, which
shows that the expression of skin color in recombinants of heterozygous cultivars is
highly unpredictable. It is also to be mentioned here that there is no repeatability in the
recombinants.
Brettell et al. (2004) inferred that in large number of mango hybrids important
fruit characteristics such as fruit weight, fruit shape, skin color, fruit width and pulp
thickness have high heritability and can therefore be readily selected in a breeding
program, of particular interest is the observation that a high frequency of hybrids with red
or burgundy blush can be recovered from crosses where one parent has an intense red
blush color. Similarly, while the unique flavor compounds associated with ‘Kensington
Pride’ are also found in nearly 50% of the hybrids involving ‘Kensington Pride’, leaf
fragrance was not found to be a reliable predictor of fruit flavor in this case.
Resistance Breeding
Mango is subjected to biotic stresses during the various stages of growth. Mango
breeding started in 1911 (Burns and Prayag, 1921) has undergone a lot of changes in the
selection of parents as well as in the methodology with the objectives becoming more
focused. Hybridization programs carried out at different centers have resulted in many
hybrids, which have excellent skin color and good sugar acid blend, which may be
suitable for export. Several insect pests are known to attack the mango crop. The most
important ones are hopper (Idiocerus spp.), fruit fly (Dacus dorsalis) and stone weevil
(Sternochetus mangiferae). Varying degree of susceptibility by different cultivars has
been reported (Iyer, 1991). We need to carry out screening of germplasm for pests like
fruit fly and stone weevil and for diseases like anthracnose extensively to determine the
degree of tolerance/resistance. The screening of cultivars for fruit fly at the Indian
Institute of Horticultural Research showed that the cultivars ‘Amrapali’ and
‘Vellaikolamban’ did not record any infestation under artificial conditions. Rami Reddy
et al. (2005) observed that ‘LA Resource-1’ can be one of the options for hopper
resistance source.
The cultivar ‘Bhadauran’ is resistant to malformation and has been used in
hybridization. However, all the F1 hybrids were susceptible when it was used as one of
the parents in the breeding program (Sharma and Majumder, 1988a). The screening of
102 cultivars by Ram Nath et al. (1987) showed that the cultivars ‘Bhyadayam Dula’,
‘Samar Bahisht Rampur’ and ‘Mian Sahib’ were found to be free from malformation.
These cultivars also can be tried in a breeding program. Gupta (1976) has reported the
cultivars ‘Neelum’, ‘Zardalu’, ‘Janardhan Pasand’ to be tolerant to powdery mildew
(Oidium mangiferae Berthat). Bacterial canker is another serious problem, Om Prakash
and ‘Srivastava (1987) reported that the cultivar ‘Bombay Green’ is resistant to canker.
However, it is to be mentioned here that screening of cultivars needs to be carried out at
least for two to three years, as it is our experience that the cultivar ‘Pulihora’, which was
found tolerant to anthracnose during one year was observed to be susceptible during
another year.
41
Breeding for Off Season Types – a Strategy to Combat Biotic and Abiotic Stress?
Utilizing the off season cultivars in the hybridization program is one of the major
challenges in mango breeding. In the Kanyakumari region of India, a number of cultivars
has been reported to be off-season bearers. Since, there is no synchronization in the
flowering there is need to conserve the pollen and use them in the hybridization program.
A large number of recombinants thus derived would help in the selection of progenies. It
is imperative that we have to use indigenous cultivars viz., ‘Kalkand’, ‘Chengavarikkai’,
which basically belong to the Kanyakumari region and not the other introduced types, as
the indigenous types would have the inbuilt genes in them, which may probably express
in other environments also. For utilizing off season cultivars it is imperative that pollen
storage will have to be taken up. Vasugi et al. (2009), observed that the species
M. odorata and M. zeylanica are cross compatible with M. indica. The percent fruit set
was observed to be 33.64 and 24.78% for M. odorata and M. zeylanica, respectively using
stored pollen with ‘Arka Anmol’ as the female parent, among the M. indica cultivars, the
fruit set ranged from 12.4 to 58.06% by the use of cryopreserved pollen.
Use of Wild Species
Wild species of mango can be of great use in crop improvement programmes. Iyer
(1991) suggested that the species could be useful in crop improvement in two ways;
1. species having edible fruit with other desirable characters; 2. species that could act as
gene donors for specific improvement like resistance to pest and disease.
The potential use of wild species in breeding has also been enumerated (Bompard,
1993). The wild species viz., Mangifera rufocostata and M. swintonioides have the
peculiarity of flowering and fruiting out of the main season. In East Kalimantan their
fruiting time usually coincides with the famine season hence called as famine food. Very
little work has been done on the evaluation of wild species. Hence, there is an urgent need
to conserve, screen and use them in breeding program. Mukherjee (1963) felt that
different Mangifera species could be inter-crossed easily based on the success obtained
from the crossing of M. zeylanica and M. odorata. Similar studies on the crossability of
wild species, using M. odorata and M. zeylanica indicated that the percent fruit set was
33.64% in M. odorata and 24.78% for M. zeylanica using stored pollen with ‘Arka
Anmol’ as the female parent (Vasugi et al., 2009). Iyer (2001) has listed the species that
are useful as parents in the breeding program; he has mentioned that wild species,
Mangifera zeylanica can be used as rootstock for saline soils and M. minor as resistant to
anthracnose.
Use of Tolerant Rootstock to Abiotic Stress
The use of rootstocks can help in two ways, one is by development of new
rootstocks tolerant to problematic soils and another is by way of screening existing
polyembryonic cultivars. Screening of mango rootstocks to salinity has shown that the
polyembryonic cultivars ‘Color’ and ‘Bappakkai’ could withstand higher level of salinity
(Palaniappan, 2001). Mango cultivar ‘13-1’ was selected as a polyembryonic
(3-6 embryos) rootstock for calcareous soils and/or for irrigation with saline water.
Mango trees on ‘13-1’ rootstocks showed excellent performance on soil containing 20%
lime, three other cultivars on ‘13-1’ rootstock showed good development on sandy soil
with 10-20% lime and irrigation water containing 250 ppm. The rootstock, Cl growth was
best in soil with good drainage (Gazit and Kadman, 1980).
Creating Variability in Polyembryonic Cultivars
In India and elsewhere, the variability for poly-embryonic cultivars is less.
Although there are several good cultivars like ‘Prior’, which is one of the main
commercial cultivars of Kerala; compared to mono-embryonic cultivars the variability is
low. Lavi et al. (2004) observed that mother trees should not be chosen entirely on the
basis of their phenotypes, and trees with inferior performance could also be included
when necessary since in mango progeny performance is quite unpredictable. Since they
42
observed that most of the variance components of the agriculturally interesting traits are
non-additive (Lavi et al., 1998) and since most of these traits result from dominant and
epistatic interactions the approach in the Israel mango breeding programme is to rely on
open pollination. Many of the cultivars like ‘Osteen’ are selections from open pollinated
progenies. Many of the poly-embryonic cultivars find their origin in the Western Ghats or
in the north-eastern region of the country, which are heavy rainfall areas. Hence, there are
chances of making selections for anthracnose tolerant or resistant types and further these
can be used as parents in the breeding program. Some of the poly-embryonic cultivars
like ‘Peach’ and ‘Nekkare’ also have attractive skin color.
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Tables
Table 1. Segregation pattern for color in various combinations.
Sl. no
Combination
Segregation for skin color
1
Alphonso × Kalapadi
Gradation of greenish yellow to yellow
2
Alphonso × Banganapalli
Gradation of yellow, one progeny had red blush
3
Alphonso × Janardhan Pasand
One progeny had red blush
4
Raspuri × Neelum
Greenish yellow in all
5
Alphonso × Neelum
One progeny had red blush
6
Alphonso × Kerala Dwarf
One progeny had red blush
7
Amrapali × Arka Anmol
All had greenish yellow
46