See discussions, stats, and author profiles for this publication at:
https://www.researchgate.net/publication/230997222
Phylogenetic analysis of the grape family
(Vitaceae) based on the noncoding plastid
trnC-petN, trnH-psbA, and trnL-F
sequences
Article in Taxon · June 2011
CITATIONS
READS
30
279
7 authors, including:
Limin Lu
Quentin Luke
11 PUBLICATIONS 88 CITATIONS
46 PUBLICATIONS 338 CITATIONS
Institute of Botany CAS
SEE PROFILE
National Museums of Kenya
SEE PROFILE
Dianxiang Zhang
Zhiduan Chen
129 PUBLICATIONS 611 CITATIONS
133 PUBLICATIONS 3,488 CITATIONS
Chinese Academy of Sciences
SEE PROFILE
Chinese Academy of Sciences
SEE PROFILE
Some of the authors of this publication are also working on these related projects:
Phylogeny and diversification of Tetrastigma (Vitaceae) View project
island biodiversity View project
All content following this page was uploaded by Limin Lu on 19 December 2016.
The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document
and are linked to publications on ResearchGate, letting you access and read them immediately.
TAXON 60 (3) • June 2011: 629–637
Ren & al. • Plastid phylogeny of Vitaceae
M O L E C U L A R PH Y LO G E N E T I C S A N D B I O G E O G R A PH Y
Phylogenetic analysis of the grape family (Vitaceae) based on the
noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences
Hui Ren,1,3 Li-Min Lu,2,3 Akiko Soejima,4 Quentin Luke, 5 Dian-Xiang Zhang,1 Zhi-Duan Chen2 & Jun Wen2,6
1 South China Botanical Garden, the Chinese Academy of Sciences, Guangzhou 510650, China
2 State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences,
Beijing 100093, China
3 Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
4 Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto 860-8555, Japan
5 East African Herbarium, National Museums of Kenya, Nairobi 00502, Kenya
6 Department of Botany, National Museum of Natural History, MRC166, Smithsonian Institution, Washington, D.C. 20013-7012, U.S.A.
Hui Ren and Li-Min Lu contributed equally to this paper.
Author for correspondence: Jun Wen, wenj@si.edu
Abstract The phylogeny of Vitaceae was reconstructed sampling 114 accessions of Vitaceae and the outgroup Leea of Leeaceae,
using three noncoding plastid markers: trnC-petN, trnH-psbA, and trnL-F. Six 5-merous genera including Parthenocissus,
Yua, Ampelocissus, Vitis, Nothocissus, and Pterisanthes form a well-supported clade. Ampelopsis, Rhoicissus, and the Cissus
striata complex form a clade sister to the clade containing all the other taxa of Vitaceae. The core Cissus clade is resolved to be
sister to the Cayratia-Tetrastigma-Cyphostemma clade, forming a clade of taxa with 4-merous flowers. The ParthenocissusYua clade is sister to the Ampelocissus-Vitis-Nothocissus-Pterisanthes clade. The Old World Cissus is paraphyletic, with the
New World core Cissus nested within it. The intercontinental disjunction between Africa and Asia may have evolved at least
twice in Cissus. Cayratia is paraphyletic with four Asian species sampled grouping with Tetrastigma and the African species
forming another clade.
Keywords phylogeny; trnC-petN ; trnH-psbA; trnL-trnF ; Vitaceae
INTRODUCTION
Vitaceae (the grape family) consist of 14 genera and about
900 species primarily distributed in tropical regions in Asia,
Africa, Australia, the Neotropics, and the Pacific islands, with
two genera (Parthenocissus Planch. and Ampelopsis Michx.)
disjunctively distributed in the north temperate regions (Soejima
& Wen, 2006; Wen, 2007a; Wen & al., 2007). Vitaceae is economically highly important containing Vitis vinifera L. as
source of grapes and raisins, as well as some taxa of Parthenocissus as ornamentals (e.g., Parthenocissus quinquefolia (L.)
Planch. and P. tricuspidata (Sieb. & Zucc.) Planch.). Taxa of
Vitaceae are usually woody climbers or herbaceous vines, and
occasionally become succulent trees (Chen & al., 2007; Wen,
2007a). This family can be easily recognized by its leaf-opposed
tendrils, unique seed morphology usually with a pair of ventral
infolds and a dorsal chalaza, presence of “pearl” glands (small
multicellular spherical caducous epidermal structures with a
short stalk), and calcium oxalate crystals contained in parenchyma (Metcalfe & Chalk, 1950; Arnott & Webb, 2000; Chen
& Manchester, 2007; Wen, 2007a; Chen, 2009).
Recent molecular analyses generally supported the Vitaceae
clade (including Leeaceae) as sister to all other rosids (Soltis &
al., 2000, 2005, 2007; Jansen & al., 2006; Wang & al., 2009).
APG III (2009) placed Vitaceae as sister to the fabids + malvids
clade (eurosids I + II) and recognized it in its own order Vitales
following Takhtajan (1997). The genus Leea L. has been excluded from Vitaceae and treated as the monogeneric family
Leeaceae by Vitaceae/Leeaceae specialists (e.g., Planchon,
1887; Suessenguth, 1953; Ridsdale, 1974; Shetty & Singh, 2000;
Latiff, 2001; Ren & al., 2003; Chen & al., 2007; Wen, 2007a,b).
Leeaceae has been supported as the closest relative of Vitaceae
based on DNA molecular phylogenetic and morphological data
(Soejima & Wen, 2006; Wen, 2007a,b; Wang & al., 2009).
Generic delimitation in Vitaceae has been problematic
(Soejima & Wen, 2006; Wen, 2007a; Wen & al., 2007). Linnaeus (1753) established the first two genera—Cissus L. and
Vitis L.—in Vitaceae and different classification systems have
been proposed ever since (Hooker, 1862; Baker, 1871; Lawson,
1875; Planchon, 1887). The number of genera has also increased
from two (Linnaeus, 1753) through ten (Planchon, 1887; Suessenguth, 1953) to presently 14 (Wen, 2007a). Planchon (1887)
delimited ten genera largely based on characteristics of the inflorescences and nectariferous discs. The 14 genera are Acareosperma Gagnep., Ampelocissus Planch., Ampelopsis, Cayratia
Juss., Cissus, Clematicissus Planch., Cyphostemma (Planch.)
Alston, Nothocissus (Miq.) Latiff, Parthenocissus, Pterisanthes Blume, Rhoicissus Planch., Tetrastigma (Miq.) Planch.,
Vitis, and Yua C.L. Li. (Soejima & Wen, 2006; Wen, 2007a;
Wen & al., 2007). Clematicissus has been recently expanded
from a monotypic genus from Western Australia to also include
the former Cissus opaca F. Muell. (Jackes & Rossetto, 2006).
629
Ren & al. • Plastid phylogeny of Vitaceae
The phylogeny of Vitaceae has been reconstructed with several markers (Ingrouille & al., 2002; Rossetto & al., 2001, 2002;
Soejima & Wen, 2006; Wen & al., 2007). With 37 taxa sampled
in the combined analyses, Soejima & Wen (2006) reconstructed
the phylogeny of Vitaceae based on three chloroplast markers (trnL-F region, atpB-rbcL spacer, the rps16 intron), which
supported three major clades: (1) the Ampelopsis-RhoicissusParthenocissus-Vitis-Nothocissus-Pterisanthes-Ampelocissus
clade; (2) the core Cissus clade (except the South American
Cissus striata complex); and (3) the Cayratia-TetrastigmaCyphostemma clade. Wen & al. (2007) sampled eleven genera and 95 species and infraspecific taxa of Vitaceae to reconstruct the relationships within Vitaceae with the nuclear
GAI1 sequences. The three major clades formerly recognized
by Soejima & Wen (2006) were strongly supported by the GAI1
data. Particularly, the first clade was 100% supported by the
GAI1 data compared to a less than 50% bootstrap (BS) value
in the three plastid markers, and a close relationship between
the core Cissus clade and the 5-merous clade was well supported. Different from the plastid phylogeny, the GAI1 data
recognized Ampelopsis as the closest relative of Parthenocissus
instead of Vitis, although the support values were low. Rossetto
& al. (2007) constructed the phylogeny of Australian Vitaceae
using plastid trnL-F and nuclear internal transcribed spacer
sequences. Their data supported a robust sister relationship between Clematicissus and a clade of two South American Cissus
(Cissus tweediana (Baker) Planch. and Cissus striata Ruiz &
Pav.) and further supported the paraphyly of Cayratia.
With the limited taxon sampling in the previous plastid
dataset and the low support values of several major clades,
it is necessary to construct the phylogeny of Vitaceae using
plastid markers with more extensive taxon sampling. We herein
expanded the taxon sampling to represent the morphological
diversity and geographic range of Vitaceae (especially with
enhanced sampling in Africa, southeastern Asia and South
America). Our main objectives of this study are to construct the
plastid phylogeny of Vitaceae using three noncoding intergenic
spacers, trnC-petN, trnH-psbA, and trnL-F, and to compare the
phylogeny with the previous analyses of the family.
MATERIALS AND METHODS
Taxon sampling. — This study sampled 114 accessions
representing 12 genera of Vitaceae with six taxa of Leeaceae
as outgroups. Voucher specimens were deposited at the US
National Herbarium, Washington, D.C. (see Appendix).
DNA extraction, amplification, and sequencing. — Genomic DNAs were extracted from silica-gel–dried material or
herbarium material using the DNeasy Plant Mini Kit protocol
(Qiagen, Crawley, U.K.). Amplification protocol and primers for
amplifying trnC-petN, trnH-psbA, and trnL-F were from Shaw
& al. (2005), Lee & Wen (2004), and Soejima & Wen (2006),
respectively. PCR products were purified by the polyethylene
glycol (PEG) precipitation method (Wen & al., 2007).
Purified PCR products were sequenced in both directions
by standard methods using BigDye 3.1 reagents with an ABI
630
TAXON 60 (3) • June 2011: 629–637
3730 automated sequencer (Applied Biosystems, Foster City,
California, U.S.A.) with the primers from the original amplification. The direct and reverse sequences were assembled and
corrected using Sequencher v.4.1.4 (Gene Codes Co., Ann Arbor,
Michigan, U.S.A.). Sequence alignment was initially performed
using ClustalX v.1.83 (Thompson & al., 1997) and then manually
adjusted in the program Se-Al v.2.0a11 (Rambaut, 2002).
Phylogenetic analyses. — Phylogenetic analyses of each
partition and the combined plastid DNA dataset (trnC-petN,
trnH-psbA, trnL-F) were conducted using maximum parsimony (MP) (Fitch, 1971) and Bayesian inference (BI) (Rannala
& Yang, 1996; Mau & al., 1999). For maximum parsimony,
PAUP* v.4.0b10 (Swofford, 2003) was used with heuristic
search, 10 random stepwise additions, TBR branch swapping,
collapse of zero-length branches, multrees option in effect,
holding one tree at each step. Gaps were either treated as missing data or coded as simple indels (Simmons & Ochoterena,
2000) using the program SeqState (Müller, 2005). Parsimony
bootstrap analyses (Felsenstein, 1985) were subsequently performed employing 1000 replicates, with the random taxon addition sequence limited to 10 and branch swapping limited to
10,000,000 rearrangements per replicate.
Prior to the model-based analytical approaches, Modeltest
v.3.7 (Posada & Crandall, 1998) was implemented to identify
the best available model for nucleotide substitutions. The generalized time reversible model (GTR + I + G model) was suggested
as the best-fit model of sequence evolution for the combined
plastid dataset.
Bayesian inference was carried out in MrBayes v.3.1.2
(Ronquist & Huelsenbeck, 2003) with a GTR + I + G model
as determined above. We performed two independent runs of
2,000,000 generations from a random starting tree with four
Markov chains, sampling one tree every 100 generations. To
check whether the burn-in stage had reached stationarity, the
likelihood scores and number of generations were plotted. After
discarding the first 2500 trees as burn-in, a 50% majority-rule
consensus tree was calculated in PAUP* for the remaining trees
to estimate the posterior probabilities (PP). Bayesian analyses
were repeated twice to confirm results.
RESULTS
The three plastid markers (trnC-petN, trnH-psbA, trnL-F)
had 3096 aligned positions, of which 2176 were constant, 301
were variable but parsimony-uninformative, and 619 were
parsimony-informative. The aligned length of each marker
was 798 from trnH-psbA, 1167 from trnC-petN and 1131 from
trnL-F. Treating gaps as missing data, the parsimony search of
the combined dataset yielded more than 100,000 most parsimonious trees (1549 steps, consistency index CI = 0.74, retention
index RI = 0.93). The strict consensus tree of the combined
dataset corresponded to the majority-rule consensus of 17,501
trees (20,001 trees minus 2500 as burn-in) derived from the BI
analysis (Fig. 1). Three strongly supported clades were recognized within Vitaceae: the Ampelocissus-Vitis-NothocissusPterisanthes-Parthenocissus-Yua clade (Fig. 1B; BS = 88%,
TAXON 60 (3) • June 2011: 629–637
PP = 1.00), the core Cissus clade (Fig. 1A; BS = 100%, PP
= 1.00), and the Cayratia-Tetrastigma-Cyphostemma clade
(Fig. 1A; BS = 100%, PP = 1.00). The core Cissus formed a
clade sister to the Cayratia-Tetrastigma-Cyphostemma clade
with moderate support (BS = 77%, PP = 0.96). Within the
Cayratia-Tetrastigma-Cyphostemma clade, both Tetrastigma
and Cyphostemma were strongly supported as monophyletic
(BS = 100%, PP = 1.00 for each of the two clades). Cayratia was
paraphyletic with four Asian species sampled forming a clade
sister to Tetrastigma (BS = 100%, PP = 1.00) and the African
species forming another well-supported clade (BS = 100%,
PP = 1.00) (Fig. 1A). The African species of Cayratia were
sister to the clade comprising the Asian Cayratia taxa and the
monophyletic Tetrastigma. The Ampelopsis-Rhoicissus-Cissus
striata clade was recognized in both MP and BI analyses, but
with low support (Fig. 1B; BS < 50%, PP = 0.81).
All the three plastid DNA regions contained gaps. After
the ambiguous blocks in the alignment were deleted, there were
237 indel characters in the plastid DNA dataset (65 from trnHpsbA, 100 from trnC-petN and 72 from trnL-F), of which 157
were parsimony-informative. The analysis treating indels as
new characters generated more than 100,000 most parsimonious trees (1868 steps, CI = 0.73, RI = 0.93). The topology of
the strict consensus tree from the analyses with gaps as new
characters was identical to that with gaps as missing data. The
bootstrap values of most clades were similar in both analyses,
except that the indel characters increased the bootstrap values
of the Cissus-Cayratia-Tetrastigma-Cyphostemma clade to
82% (vs. 77% with gaps as missing data), and decreased that
of the Ampelocissus-Vitis-Nothocissus-Pterisanthes-Parthenocissus-Yua clade to 79% (vs. 88% with gaps as missing data).
DISCUSSION
Our present analyses sampling 12 genera and 98 species of
Vitaceae and three plastid markers provided a well-supported
phylogeny for the family. Six 5-merous genera including Ampelocissus, Vitis, Nothocissus, Pterisanthes, Parthenocissus and
Yua, form a well-supported clade. Ampelopsis, Rhoicissus and
the Cissus striata complex form a clade sister to all the other
taxa of Vitaceae. The core Cissus clade is resolved to be sister
to the Cayratia-Tetrastigma-Cyphostemma clade. All taxa with
4-merous flowers form a clade.
Five-merous taxa. — The relationships among the
5-merous taxa have never been well resolved in previous studies. The nuclear GAI1 data (Wen & al., 2007) weakly supported
(BS = 63%) the Ampelopsis-Rhoicissus-Cissus striata clade
as the closest relative of the Parthenocissus-Yua clade, while
the plastid data by Soejima & Wen (2006) supported the close
relationship between the Ampelocissus-Vitis-NothocissusPterisanthes clade and the Parthenocissus-Yua clade but with
low support (BS = 63%). In the present study, Ampelocissus,
Vitis, Nothocissus, Pterisanthes, Parthenocissus, and Yua form
a well supported clade (BS = 88%, PP = 1.00). Within this clade,
two subclades, the Ampelocissus-Vitis-Nothocissus-Pterisanthes clade and the Parthenocissus-Yua clade, are recognized
Ren & al. • Plastid phylogeny of Vitaceae
albeit with low support (Fig. 1B). The Ampelopsis-RhoicissusCissus striata clade was well supported by previous analyses
(Soejima & Wen, 2006; Wen & al., 2007), but it is only weakly
supported here.
The Ampelocissus-Vitis-Nothocissus-Pterisanthes clade
is composed of Nothocissus spicifera (Griff.) Latiff, Pterisanthes stonei Latiff, two Ampelocissus from Central America
and 11 species of Vitis. Vitis is characterized by its dioecious
reproductive biology and calyptrate petals, and two very distinct subgenera are commonly recognized: V. subg. Vitis L. and
V. subg. Muscadinia (Planch.) Small (Brizicky, 1965; Wen,
2007a). Subgenus Vitis contains about 60 species distributed
primarily in eastern Asia and North America to Central America, while subg. Muscadinia consists of only 2–3 species from
North America, the West Indies to Mexico. The monophyly of
Vitis was not resolved in the current study, but has been supported by the recent phylogenetic work on Vitis (Tröndle &
al., 2010). Here species of subg. Vitis form a weakly supported
clade and two species from subg. Muscadinia (Vitis popenoei
J.L. Fennell, V. rotundifolia Michx.) constitute a strongly
supported clade. Within subg. Vitis, species from Asia and
North America form an unresolved polytomy (Fig. 1B). With
30 Vitis species and several cultivars of V. vinifera sampled,
the genus-level phylogenetic study discriminated three clades
within subg. Vitis corresponding to their distribution in Europe,
Asia, and North America, although the European and American
clades were not well supported (Tröndle & al., 2010). Based on
cpDNA polymorphisms, Péros & al. (2011) recognized a wellsupported American clade and obtained evidence supporting an
Asian origin for subg. Vitis. They also strongly supported the
sister relationship between subg. Vitis and subg. Muscadinia.
Taxa of subg. Muscadinia differ morphologically from subg.
Vitis in their simple tendrils, prominent lenticels on stems, pith
continuous through the nodes, and shorter infructescences with
fewer fruits (Brizicky, 1965; Wen, 2007a). Furthermore, the
diploid chromosome number in subg. Vitis is 38, while it is 40
in V. popenoei and V. rotundifolia. Some workers (e.g., Bouquet,
1983) thus suggested splitting Vitis popenoei, V. rotundifolia
and V. munsoniana Simpson ex Munson from Vitis and establishing a distinct genus. The close relationship between
Ampelocissus and Vitis has been reported by previous studies
(Soejima & Wen, 2006; Wen & al., 2007). Ampelocissus is a
genus with ca. 90 species distributed in Asia, Africa, and Central America. It was segregated from Vitis by Planchon (1884)
based on its 4–5-merous flowers in thyrses, inflorescences subtended by a tendril near the base, and the T-shaped endosperm
in transverse section (M-shaped in Vitis) (Jackes, 1984). The
Asian Ampelocissus was suggested to be more closely related
to Nothocissus and Pterisanthes than to its congeneric species
in Central America (Soejima & Wen, 2006). We need to expand
the sampling of Ampelocissus further evaluate the relationships
within the Ampelocissus-Vitis-Nothocissus-Pterisanthes clade.
Within the Parthenocissus-Yua clade, three subclades are
recognized. The two species of Yua form a strongly supported
clade. Taxa of Yua were segregated from Parthenocissus by Li
(1990) based on their 2-branched tendrils, leaf-opposed dichasia
and the extent of the seed ventral infolds upward for 2/3 of the
631
Ren & al. • Plastid phylogeny of Vitaceae
TAXON 60 (3) • June 2011: 629–637
seed length from the base (Li, 1998; Chen & al., 2007). Species of Parthenocissus form two separate clades corresponding to their distribution in the New and the Old World (Fig.
1B). The New World Parthenocissus includes three species
with palmate 5–7-foliolate leaves, while the Old World Parthenocissus contains nine species with simple or 3–5-foliolate
leaves. Three subclades are recognized within the Old World
Parthenocissus, which are consistent with their leaf, tendril
and inflorescence characters (Fig. 1B). The subclade of Parthenocissus dalzielii Gagnep., P. tricuspidata, and P. suberosa
Hand.-Mazz. possesses synapomorphies of having simple and
3-foliolate leaves, the young apex of tendrils expanding to
form ball-like structures, and a loose corymbose polychasium
on extremely short branches. The 3-foliolate species are from
100
1.00
100
1.00
A
92
1.00
53
1.00
Africa
Asia
New World
4-merous taxa
100
1.00
100
1.00
100
1.00
94
1.00
<50
0.64
100
1.00
92
1.00
81
1.00
97
1.00
100
1.00
100
1.00
100
1.00
90
1.00
100
1.00
100
1.00
100
0.99
100
1.00
100
1.00
100
0.98
100
1.00
51
1.00
100
1.00
100
1.00
77
0.96
100
1.00
96
1.00
74
0.72
100
1.00
100
1.00
100
1.00
66
0.93
51
0.97
100
1.00
87
1.00
100
1.00
100
0.99
64
0.80
83
1.00
100
1.00
87
0.99
100
1.00
62
0.92
98
1.00
Tetrastigma sp. W5983
Tetrastigma serrulatum NM445
Tetrastigma obtectum W9121
Tetrastigma obtectum NM454
Tetrastigma triphyllum NM342
Tetrastigma triphyllum W9051
Tetrastigma yunnanense W9143
Tetrastigma xishuangbannaense R55108
Tetrastigma sp. W8370
Tetrastigma bioritsense W9451
Tetrastigma hemsleyanum NM451
Tetrastigma erubescens R55116
Tetrastigma garrettii NP s.n.
Tetrastigma jinghongense W8471
Tetrastigma lanyuense W9404
Tetrastigma pachyphyllum W8319
Tetrastigma planicaule R55071
Tetrastigma siamense 03439
Cayratia corniculata W9461
Cayratia japonica W8330
Cayratia japonica W6140
Cayratia japonica W9262
Cayratia japonica W9263
Cayratia maritima W9403
Cayratia trifolia R55095
Cayratia trifolia R55101
Cayratia debilis C3459
Cayratia debilis C4136
Cayratia gracilis 5828
Cyphostemma sp. L11552
Cyphostemma sp. RG6814
Cyphostemma duparquetii L11534
Cyphostemma dysocarpum L11457
Cyphostemma kilimandscharicum L11469
Cyphostemma kibweziense L11481
Cyphostemma vogelli 4127
Cyphostemma sp. RG6878
Cyphostemma cyphopetalum L11451
Cyphostemma heterotrichum Lovett4027
Cyphostemma kirkianum L11473
Cyphostemma maranguense L11468
Cyphostemma thomasii L11448
Cyphostemma zimmermannii L11476
Cyphostemma montagnacii W6672
Cissus sp. NW53919
Cissus erosa W8574
Cissus sp. W8738
Cissus incisa W7287
Cissus sicyoides W8734
Cissus assamica NM362
Cissus assamica W9406
Cissus discolor 20061111
Cissus cornifolia L11452
Cissus producta L11528
Cissus trothae L11537
Cissus albiporcata L11456
Cissus phymatocarpa L11474
Cissus quadrangularis W7368
Cissus subtetragona R55110
Cissus rotundifolia L11478
Cissus rotundifolia L11458
Cissus aralioides 19870062
Cissus sciaphila L11477
Fig. 1. Strict consensus tree of 208 equally most parsimonious trees from the combined analysis of the plastid trnC-petN, trnH-psbA, and trnL-F
(1549 steps; CI = 0.74; RI = 0.93). A, Four-merous clade including the core Cissus clade and the Cayratia-Tetrastigma-Cyphostemma clade; B, fivemerous taxa including the Ampelocissus-Vitis-Nothocissus-Pterisanthes-Parthenocissus-Yua clade and the weakly supported Ampelopsis-Rhoicissus-Cissus striata clade. Numbers above branches indicate bootstrap values, and numbers below branches are Bayesian posterior probability values.
632
TAXON 60 (3) • June 2011: 629–637
Ren & al. • Plastid phylogeny of Vitaceae
75
0.98
<50
0.90
57
1.00
92
1.00
88
1.00
98
1.00
88
1.00
88
1.00
100
1.00
75
1.00
96
1.00
88
1.00
100
1.00
100
1.00
63
1.00
100
1.00
<50
0.99
97
1.00
82
0.99
<50
0.81
92
1.00
100
1.00
100
1.00
85
0.95
79
0.70
91
1.00
90
0.99
Ampelocissus acapulcensis W8696
Ampelocissus erdwendbergii W8702
Nothocissus spicifera W8384
Pterisanthes stonei W8346
Vitis betulifolia W9308
Vitis lanata W9184
Vitis lanata W9197
Vitis mengziensis NM415
Vitis chunganensis W9305
Vitis heyneana W9042
Vitis heyneana W9378
Vitis riparia W8658
Vitis tilifolia W8713
Vitis thunbergii W9446
Vitis sp. NM372
Vitis popenoei W8724
Vitis rotundifolia W11087
Parthenocissus chinensis NM455
Parthenocissus chinensis W6530
Parthenocissus dalzielii W9325
Parthenocissus dalzielii W9372
Parthenocissus suberosa NM358
Parthenocissus tricuspidata NM355
Parthenocissus henryana NM359
Parthenocissus laetevirens W9379
Parthenocissus quinquefolia W8684
Parthenocissus vitacea W7234
Yua austro-orientalis S1313
Yua thomsoni NM469
Ampelopsis bodinieri W8017
Ampelopsis bodinieri R55193
Ampelopsis delavayana W9377
Ampelopsis glandulosa W9380
Ampelopsis glandulosa var. kulingensis
Ampelopsis glandulosa var. hancei
Ampelopsis japonica R55207
Ampelopsis cordata W7141
Ampelopsis denudata W8699
Ampelopsis cantoniensis W9381
Ampelopsis grossedentata R55072
Ampelopsis chaffanjonii W9359
Ampelopsis rubifolia W9285
Cissus striata W7355
Rhoicissus tridentata L11453
Rhoicissus tomentosa 19656252
Leea aequata W8382
Leea indica W8341
Leea rubra 05-716
Leea guineensis W8250
Leea guineensis W9408
Leea macrophylla R55105
Subg.
Vitis
Africa
Asia
New World
5-merous taxa
Subg.
Muscadinia
<50
1.00
3-foliolate
Simple or
3-foliolate
5-7-foliolate
Sect.
Ampelopsis
B
The Ampelopsis-Rhoicissus-Cissus striata clade was supported in previous studies (e.g., Soejima & Wen, 2006; Wen
& al., 2007). This clade is present in both the strict consensus
tree and the Bayesian 50% majority-rule tree with low support
in the current analyses. Ampelopsis is a genus of about 25 species, which are disjunctively distributed between temperate to
subtropical Asia and North and Central America (Wen, 2007a).
This genus is characterized by its leaf-opposed corymbose
cymes, 5-merous flowers, well-developed floral disks and
M-shaped endosperm. In particular, it covers the leaf diversity
of the entire family, with leaves varying from simple, trifoliate, palmate to 1- or 2-pinnate. Two sections corresponding to
leaf morphology have been recognized: A. sect. Ampelopsis
with simple or palmately divided (rarely palmately compound)
Sect.
Leeaceifoliae
Asia and characterized by their three leaflets, long and curving tendrils, and a compound pseudoterminal dichasium on a
short branch with two to three leaves. The close relationship
between Parthenocissus henryana (Hemsl.) Graebn. ex Diels &
Gilg and P. laetevirens Rehder is supported by their 5-foliolate
leaves, young apex of tendrils expanding as tubercles, and a
paniculate-polychasium with a well-developed main axis. The
clades recognized by our analyses are generally congruent with
those from the recent phylogenetic analysis of Parthenocissus
by Nie & al. (2010). The monophyly of Parthenocissus has been
well supported by previous molecular work (Wen & al., 2007;
Nie & al., 2010), but the relationship between Parthenocissus
and Yua was not resolved by the three plastid markers employed
in this study.
633
Ren & al. • Plastid phylogeny of Vitaceae
leaves, and A. sect. Leeaceifoliae with 1- or 2-pinnately compound leaves (Galet, 1967). Ampelopsis was shown to be paraphyletic by previous plastid and nuclear GAI1 analyses. The
plastid data (Soejima & Wen, 2006) supported that the African
Rhoicissus and the South American Cissus striata complex
formed a clade with the simple or palmately leaved Ampelopsis,
while the nuclear data (Wen & al., 2007) suggested that they
were more closely related to the pinnately leaved Ampelopsis.
In the current analysis, sect. Ampelopsis, sect. Leeaceifoliae,
Rhoicissus and Cissus striata form a polytomy. Congruent
with previous analyses, the two sections based on leaf morphology are supported as monophyletic (Fig. 1B). Beyond the
differences in leaf morphology, the two sections also differ in
that taxa in sect. Ampelopsis have serial accessory buds, while
those in sect. Leeaceifoliae have complex axillary buds as in
Vitis vinifera (Bernard, 1972–1973; Gerrath & Posluszny, 1989;
Soejima & Wen, 2006; Wen & al., 2007).
The Ampelopsis-Rhoicissus-Cissus striata clade is suggested to be sister to the major clade consisting of all the other
taxa of Vitaceae. This result is not consistent with the previous
plastid and nuclear GAI1 data and needs to be tested. The rbcL
data (Ingrouille & al., 2002), however, resolved Ampelopsis as
the basalmost branch of Vitaceae albeit with no support. Ingrouille & al. (2002) argued that the presence of pinnate leaves,
the thick corolla, and the floral and vegetative development in
Ampelopsis were the least-derived characters within Vitaceae
as compared with those in the outgroup taxa from Leeaceae
(also see Gerrath & Posluszny, 1988a). We will test the position of the Ampelopsis-Rhoicissus-Cissus striata clade in our
future analyses.
Four-merous taxa. — Our data have resolved the 4-merous
taxa as a moderately supported clade. Beyond the 4-merous
flowers, the 4-merous clade also has stomatal apparatuses that
are mostly hemiparacytic, cyclocytic or staurocytic (vs. mostly
anomocytic in the 5-merous taxa), and the chromosome number
as n = 10, 11, 12, 13 (mostly 19 or 20 in the 5-merous species)
(Ren & al., 2003; Wen, 2007a).
Cissus is the largest genus in Vitaceae with about 350
species distributed throughout the tropics (Wen, 2007a) and
possesses remarkable morphological diversity (Jackes, 1988;
Lombardi, 2007). This genus usually has simple leaves, welldeveloped and thick floral disks, and one-seeded fruits, although there are species with compound leaves and more than
one seed per fruit (Rossetto & al., 2002; Wen, 2007a; Wen &
al., 2007). A core group of Cissus was supported in Rossetto
& al. (2001, 2002, 2007), Soejima & Wen (2006), and Wen &
al. (2007). This group contains most taxa from the Old World
(Africa, Asia, Australia) and the New World (the Americas), but
does not include the South American Cissus striata, C. simsiana Roem. & Schult., C. tweediana and the Australasian C. antarctica Vent., C. hypoglauca A. Gray, C. oblonga (Benth.)
Planch., C. opaca and C. sterculiifolia (Benth.) Planch. Cissus
opaca has been recently transferred to Clematicissus (Jackes
& Rossetto, 2006). The core Cissus clade is resolved into two
subclades (Fig. 1A), with one composed of taxa from the Old
World only (Africa and Asia), and the other containing both
the New and Old World taxa, in which the New World core
634
TAXON 60 (3) • June 2011: 629–637
Cissus sampled so far form a monophyletic group. In particular,
both subclades include species from Africa and Asia, suggesting the intercontinental disjunction between Africa and Asia
has evolved at least twice within Cissus. Recent phylogenetic
analyses resolved Cissus as polyphyletic and recognized three
distinct clades: the core Cissus clade, the Cissus striata clade
and the Cissus antarctica clade (Rossetto & al., 2002, 2007;
Soejima & Wen, 2006; Wen & al., 2007). The core Cissus
clade contains the majority taxa of Cissus including the type
of the generic name C. quadrangularis L. and covers the morphological diversity of the entire genus. In the present study,
the core Cissus clade is composed of both simple-leaved (e.g.,
C. quadrangularis) and compound-leaved taxa (e.g., Cissus
erosa Rich., C. aralioides Planch.). The Cissus striata clade
includes the South American Cissus striata and its close relatives (e.g., C. simsiana, C. tweediana), which were supported
as closely related to Rhoicissus and Ampelopsis by Soejima
& Wen (2006) and Wen & al. (2007). Rossetto & al. (2007),
however, strongly supported Cissus striata and C. tweediana
as sister to Clematicissus. Wen & al. (2007) hypothesized that
Clematicissus may well belong to the Ampelopsis-RhoicissusCissus striata clade. The Cissus antarctica clade includes four
Australian species: C. antarctica, C. hypoglauca, C. oblonga
and C. sterculiifolia, which were resolved as nested within the
Vitis clade and were weakly supported as more closely related
to V. rotundifolia by the combined plastid (trnL) and nuclear
(ITS1) data (Rossetto & al., 2002). Rossetto & al. (2002) suggested that the four Australian Cissus species may be placed in
Muscadinia or as part of a new genus distinct from Vitis. The
updated phylogenetic work of Rossetto & al. (2007), however,
did not replicate the sister relationships between Vitis rotundifolia and the Cissus antarctica clade. Furthermore, the comparative ontogenetic studies of Vitis riparia, V. rotundifolia,
Cissus antarctica and C. quadrangularis did not support the
close relationship between C. antarctica and Vitis (Gerrath &
Posluszny, 1988b,c, 1994; Timmons & al., 2007a,b). Timmons
& al. (2007b) proposed to segregate the four Australian species
from Cissus and establish a distinct genus based on the number
of chromosomes, DNA variability, presence of supernumerary
buds, degree of stipule connectivity, uncommitted primordial,
and type of inflorescence branching. Cissus exhibits remarkable morphological diversity, complex biogeographic distributions and variable karyotypes and chromosomal numbers (2n
= 20, 22, 24, 26, 28, 32, 44, ca. 45, 48, 50, and 96) and it needs
to be further analyzed with an expanded sampling scheme.
Within the Cayratia-Tetrastigma-Cyphostemma clade,
Cyphostemma and Tetrastigma are each monophyletic, while
Cayratia is paraphyletic. The paraphyly of Cayratia has been
reported previously (e.g., Ingrouille & al., 2002; Rossetto &
al., 2002, 2007; Soejima & Wen, 2006; Wen & al., 2007). The
analysis of Ingrouille & al (2002) indicated a weakly supported
Cayratia-Tetrastigma clade. Rossetto & al. (2002) supported
the close relationship between Cayratia and Tetrastigma. In
addition, Cayratia japonica (Thunb.) Gagnep. and C. trifolia
(L.) Domin were suggested by the ITS data to be closely related
(Rossetto & al., 2002). With only four Asian Cayratia species sampled, the previous studies using plastid data and the
TAXON 60 (3) • June 2011: 629–637
nuclear GAI1 data (Soejima & Wen, 2006; Wen & al., 2007)
supported a close relationship between Cayratia japonica and
the monophyletic Tetrastigma with the other Asian Cayratia
species forming another clade (Soejima & Wen, 2006; Wen
& al., 2007). Cayratia contains 63 species and is distributed
mostly in tropical and subtropical Africa, Asia, Australia,
and the Pacific. This genus is characterized by its axillary,
or pseudo-axillary, or sometimes leaf-opposed inflorescences
with bisexual, tetramerous flowers and T- or U-shaped endosperm in transverse section. With the sampling of the African
Cayratia, our plastid analyses suggest that the three Cayratia
from Africa form a strongly supported clade, while the Asian
species sampled so far form a robust clade with the monophyletic Tetrastigma. The close relationship between Tetrastigma and the Cayratia japonica complex (e.g., C. trifolia,
C. pseudotrifolia W.T. Wang) has been reported by previous
studies (Soejima & Wen, 2006; Wen & al., 2007). The circumscription of Cayratia japonica, however, is very broad. With
four individuals sampled from China, Vietnam, and Malaysia,
respectively, Cayratia japonica is supported to be paraphyletic
with C. corniculata (Benth.) Gagnep. nested within it. Thus,
the delimitation of this species and the relationships within the
Cayratia japonica complex need further investigation.
CONCLUSIONS
Our analyses provide further insights into the generic relationships within Vitaceae. Parthenocissus and Yua are supported as closely related to Vitis instead of to Ampelopsis. The
basalmost position of Ampelopsis is weakly supported, which
requires further test with morphological and molecular evidence. Instead of being nested within the 5-merous clade as in
previous analyses, the core Cissus clade is resolved as sister
to a clade composed of all other 4-merous taxa with moderate
support. The relationships within the core Cissus clade were
further clarified with the expanded sampling. Cayratia was
conformed as paraphyletic with the monophyletic Tetrastigma
nested within it. Cayratia japonica and its close relatives from
Asia form a clade sister to the monophyletic Tetrastigma,
whereas the two African Cayratia species we sampled form
a distinct clade.
ACKNOWLEDGEMENTS
The study was supported by the National Science Foundation (grant DEB 0743474 to S.R. Manchester and J. Wen)
and the John D. and Catherine T. MacArthur Foundation to
J. Wen. Laboratory work was done at and partially supported
by the Laboratory of Analytical Biology of the National Museum of Natural History, Smithsonian Institution. Fieldwork in
North America and Madagascar was supported by the Small
Grants Program of the National Museum of Natural History
of the Smithsonian Institution, and an Endowment grant from
the Office of Undersecretary of Sciences of the Smithsonian
Institution.
Ren & al. • Plastid phylogeny of Vitaceae
LITERATURE CITED
APG III (Angiosperm Phylogeny Group). 2009. An update of the
Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161: 105–121.
Arnott, H.J. & Webb, M.A. 2000. Twinned raphides of calcium oxalate
in grape (Vitis): Implications for crystal stability and function. Int.
J. Pl. Sci. 161: 133–142.
Baker, J.G. 1871. Ampelideae. Pp. 197–220 in: Martius, C.F.P. von
(ed.), Flora brasiliensis, vol. 14(2). Munich, Leipzig: apud Fried.
Fleischer.
Bernard, A.C. 1972–1973. A propos du complex axillaire chez certaines
Vitacées. Naturalia Monspel., Sér. Bot. 23/24: 49–61.
Bouquet, A. 1983. Contribution a l’etude de l’espece Muscadinia rotundifolia et de ses hybrides avec Vitis vinifera. Applications en
selection. Dissertation, University of Bordeaux, France.
Brizicky, G.K. 1965. The genera of Vitaceae in the southeastern United
States. J. Arnold Arbor. 46: 48–67.
Chen, I. 2009. History of Vitaceae inferred from morphology-based
phylogeny and the fossil record of seeds. Dissertation, University
of Florida, Gainesville, U.S.A.
Chen, I. & Manchester, S.R. 2007. Seed morphology of modern and
fossil Ampelocissus (Vitaceae) and implications for phytogeography. Amer. J. Bot. 94: 1534–1553.
Chen, Z.D., Ren, H. & Wen, J. 2007. Vitaceae. Pp. 173–177 in: Wu,
Z.Y. & Raven, P.H. (eds.), Flora of China, vol. 12. Beijing: Science
Press; St. Louis: Missouri Botanical Garden.
Felsenstein, J. 1985. Confidence limits on phylogenies: An approach
using the bootstrap. Evolution 39: 783–791.
Fitch, W.M. 1971. Toward defining the course of evolution: Minimum
change for a specific tree topology. Syst. Zool. 20: 406–416.
Galet, P. 1967. Recherches sur les méthodes d’identification et de classification des Vitacées temprées. Thesis, Université de Montpellier,
France.
Gerrath, J.M. & Posluszny, U. 1988a. Comparative floral development in some members of the Vitaceae. Pp. 121–131 in: Leins, P.,
Tucker, S.C. & Endress, P.K. (eds.), Aspects of floral development.
Berlin: Cramer.
Gerrath, J.M. & Posluszny, U. 1988b. Morphological and anatomical
development in the Vitaceae. I. Vegetative development in Vitis
riparia. Canad. J. Bot. 66: 209–224.
Gerrath, J.M. & Posluszny, U. 1988c. Morphological and anatomical development in the Vitaceae. II. Floral development in Vitis
riparia. Canad. J. Bot. 66: 1334–1351.
Gerrath, J.M. & Posluszny, U. 1989. Morphological and anatomical
development in the Vitaceae. V. Vegetative and floral development
in Ampelopsis brevipedunculata. Canad. J. Bot. 67: 2371–2386.
Gerrath, J.M. & Posluszny, U. 1994. Morphological and anatomical
development in the Vitaceae. VI. Cissus antarctica. Canad. J.
Bot. 72: 635–643.
Hooker, J.D. 1862. Ampelideae. Pp. 386–388 in: Bentham G. & Hooker
J.D. (eds.), Genera plantarum. London: Reeve.
Ingrouille, M.J., Chase, M.W., Fay, M.F., Bowman, D., Van der Bank,
M. & Bruijin, A.D.E. 2002. Systematics of Vitaceae from the viewpoint of plastid rbcL sequence data. Bot. J. Linn. Soc. 138: 421–432.
Jackes, B.R. 1984. Revision of the Australian Vitaceae, 1. Ampelocissus
Planchon. Austrobaileya 2: 81–86.
Jackes, B.R. 1988. Revision of the Australian Vitaceae, 3. Cissus L.
Austrobaileya 2: 481–505.
Jackes, B.R. & Rossetto, M. 2006. A new combination in Clematicissus Planch. (Vitaceae). Telopea 11: 390–391.
Jansen, R.K., Kaittanis, C., Saski, C., Lee, S.-B., Tomkins, J., Alverson, A.J. & Daniell, H. 2006. Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: Effects
of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol. Biol. 6: 32. DOI: 10.1186/14712148-6-32.
635
Ren & al. • Plastid phylogeny of Vitaceae
Latiff, A. 2001. Diversity of the Vitaceae in the Malay Archipelago.
Malayan Nat. J. 55: 29–42.
Lawson, M.A. 1875. Ampelideae. Pp. 544–588 in: Hooker J.D. (ed.),
Flora of British India, vol. 1. London: Reeve.
Lee, C. & Wen, J. 2004. Phylogeny of Panax using chloroplast trnCtrnD intergenic region and the utility of trnC-trnD in interspecific
studies of plants. Molec. Phylog. Evol. 31: 894–903.
Li, C.L. 1990. Yua C. L. Li — a new genus of Vitaceae. Acta Bot. Yunnan. 12: 1–10.
Li, C.L. 1998. Vitaceae. Pp. 1–196 in: Delectis Florae Reipublicae Popularis Sinicae Agendae Academiae Sinicae Edita (ed.), Flora Reipublicae Popularis Sinicae, vol. 48, part 2. Beijing: Science Press.
Linnaeus, C. 1753. Species plantarum. Stockholm: Impensis Laurentii
Salvii.
Lombardi, J.A. 2007. Systematics of Vitaceae in South America.
Canad. J. Bot. 85: 712–721.
Mau, B., Newton, M. & Larget, B. 1999. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55: 1–12.
Metcalfe, C.R. & Chalk, L. 1950. Anatomy of dicot leaves, stem, and
wood in relation to taxonomy, with notes on economic uses, vol. 1.
Oxford: Clarendon Press.
Müller, K. 2005. SeqState—primer design and sequence statistics for
phylogenetic DNA data sets. Appl. Bioinformatics 4: 65–69.
Nie, Z.L., Sun, H., Chen, Z.D., Meng, Y., Manchester, S.R. & Wen,
J. 2010. Molecular phylogeny and biogeographic diversification
of Parthenocissus (Vitaceae) disjunct between Asia and North
America. Amer. J. Bot. 97: 1342–1353.
Péros, J.P., Berger, G., Portemont, A., Boursiquot, J.M. & Lacombe,
T. 2011. Genetic variation and biogeography of the disjunct Vitis
subg. Vitis (Vitaceae). J. Biogeogr. 38: 471–486.
Planchon, J.E. 1884. Les vignes des tropiques du genre Ampelocissus.
Vigne Amér. Vitic. Eur. 8: 370–381.
Planchon, J.E. 1887. Monographie des Ampélidées vrais. Pp. 305–654
in: Candolle, A.F.P.P. de & Candolle, C. de (eds.), Monographiae
phanaerogamarum, vol. 5. Paris: Masson.
Posada, D. & Crandall, K.A. 1998. Modeltest: Testing the model of
DNA substitution. Bioinformatics 14: 817–818.
Rambaut, A. 2002. Se-Al: Sequence alignment editor, version 2.0all.
Oxford: University of Oxford. Available from http://tree.bio.ed.ac
.uk/software/seal/.
Rannala, B. & Yang, Z.H. 1996. Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference.
J. Molec. Evol. 43: 304–311.
Ren, H., Pan, K.Y., Chen, Z.D. & Wang, R.Q. 2003. Structural characters of leaf epidermis and their systematic significance in Vitaceae.
Acta Phytotax. Sin. 41: 531–544.
Ridsdale, C.E. 1974. A revision of the family Leeaceae. Blumea 22:
57–100.
Ronquist, F. & Huelsenbeck, J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
Rossetto, M., Crayn, D.M., Jackes, B.R. & Porter, C. 2007. An updated estimate of intergeneric phylogenetic relationships in the
Australian Vitaceae. Canad. J. Bot. 85: 722–730.
Rossetto, M., Jackes, B.R., Scott, K.D. & Henry, R.J. 2001. Intergeneric relationships in the Australian Vitaceae: New evidence from
cpDNA analysis. Genet. Res. Crop Evol. 48 : 307–341.
Rossetto, M., Jackes, B.R., Scott, K.D. & Henry, R.J. 2002. Is the
genus Cissus (Vitaceae) monophyletic? Evidence from plastid and
nuclear ribosomal DNA. Syst. Bot. 27: 522–533.
TAXON 60 (3) • June 2011: 629–637
Shaw, J., Lickey, E.B., Beck, J.T., Farmer, S.S., Liu, W., Miller,
J., Chaw, S.K., Winder, C.T., Schilling, E.E. & Small, R.L.
2005. The tortoise and the hare: Relative utility of 21 noncoding
chloroplast DNA sequences for phylogenetic analysis. Amer. J.
Bot. 92: 142–166.
Shetty, B.V. & Singh, P. 2000. Vitaceae. Pp. 246–324 in: Singh, N.P.,
Vohra, J.N., Hajra, P.K. & Singh, D.K. (eds.), Flora of India, vol. 5.
Calcutta: Botanical Survey of India.
Simmons, M.P. & Ochoterena, H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49: 369–381.
Soejima, A. & Wen, J. 2006. Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers. Amer. J. Bot.
93: 278–287.
Soltis, D.E., Gitzendanner, M.A. & Soltis, P.S. 2007. A 567-taxon data
set for angiosperms: The challenges posed by Bayesian analyses
of large data sets. Int. J. Pl. Sci. 168: 137–157.
Soltis, D.E., Soltis, P.S., Chase, M.W., Mort, M.E., Albach, D.C.,
Zanis, M., Savolainen, V., Hahn, W.H., Hoot, S.B., Fay, M.F.,
Axtell, M., Swensen, S.M., Prince, L.M., Kress, W.J., Nixon,
K.C. & Farris, J.S. 2000. Angiosperm phylogeny inferred from
18S rDNA, rbcL, and atpB sequences. Bot. J. Linn. Soc. 133:
381–461.
Soltis, D.E., Soltis, P.S., Endress, P.K. & Chase, M.W. 2005. Phylogeny and evolution of angiosperms. Sunderland, Massachusetts:
Sinauer.
Suessenguth, K. 1953. Vitaceae. Pp. 174–333 in: Engler A. & Prantl K.
(eds.), Die natürlichen Pflanzenfamilien, vol. 20. Berlin: Duncker
& Humblot.
Swofford, D.L. 2003. PAUP*: Phylogenetic analysis using parsimony
(*and other methods), version 4.0b10. Sunderland, Massachusetts:
Sinauer.
Takhtajan, A. 1997. Diversity and classification of flowering plants.
New York: Columbia University Press.
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis
tools. Nucl. Acids Res. 25: 4876–4882.
Timmons, S.A., Posluszny, U. & Gerrath, J.M. 2007a. Morphological
and anatomical development in the Vitaceae IX. Comparative ontogeny and phylogenetic implications of Vitis rotundifolia Michx.
Canad. J. Bot. 85: 850–859.
Timmons, S.A., Posluszny, U. & Gerrath, J.M. 2007b. Morphological
and anatomical development in the Vitaceae. X. Comparative ontogeny and phylogenetic implications of Cissus quadrangularis L.
Canad. J. Bot. 85: 860–872.
Tröndle, D., Schröder, S., Kassemeyer, H.H., Kiefer, C., Koch, M.A.
& Nick, P. 2010. Molecular phylogeny of the genus Vitis (Vitaceae)
based on plastid markers. Amer. J. Bot. 97: 1168–1178.
Wang, H., Moore, M.J., Soltis, P.S., Bell, C.D., Brockington, S.F.,
Alexandre, R., Davis, C.C., Latvis, M., Manchester, S.R. &
Soltis, D.E. 2009. Rosid radiation and the rapid rise of angiospermdominated forests. Proc. Natl. Acad. Sci. U.S.A. 106: 3853–3858.
Wen, J. 2007a. Vitaceae. Pp. 466–478 in: Kubitzki, K. (ed.), The families
and genera of vascular plants, vol. 9. Berlin: Springer.
Wen, J. 2007b. Leeaceae. Pp. 220–224 in: Kubitzki, K. (ed.), The families and genera of vascular plants, vol. 9. Berlin: Springer.
Wen, J., Nie, Z.L., Soejima, A. & Meng, Y. 2007. Phylogeny of Vitaceae based on the nuclear GAI1 gene sequences. Canad. J. Bot.
85: 731–745.
Appendix. Voucher information and accession numbers included in the phylogenetic analysis on Vitaceae. All voucher specimens have been deposited at
the US National Herbarium (US).Accession numbers beginning with * are new sequences. Dashes indicate missing sequences. Additional sequences were
from Soejima & Wen (2006) and Nie & al. (2010).
Taxon: collector(s) and collection number; locality; GenBank accession numbers for trnC-petN; trnH-psbA; trnL-F.
Ampelocissus acapulcensis (Kunth) Planch.: J. Wen 8696; Mexico, Oaxaca; JF437172; JF437058; JF437281. Ampelocissus erdwendbergii Planch.: J. Wen 8702;
Mexico, Chiapas; JF437173; JF437059; JF437282. Ampelopsis bodinieri (H. Lév. & Vaniot) Rehder: H. Ren 55193; China, Guangdong; JF437175; JF437061;
636
TAXON 60 (3) • June 2011: 629–637
Ren & al. • Plastid phylogeny of Vitaceae
Appendix. Continued.
JF437284. Ampelopsis bodinieri (H. Lév. & Vaniot) Rehder: J. Wen 8017; China, Gansu; JF437174; JF437060; JF437283. Ampelopsis cantoniensis (Hook. &
Arn.) K. Koch: J. Wen 9381; China, Guangxi; JF437176; JF437062; JF437285. Ampelopsis chaffanjonii (H. Lév.) Rehder: J. Wen 9359; Madagascar, Antsiranana;
JF437177; JF437063; JF437286. Ampelopsis cordata Michx.: J. Wen 7141; U.S.A., Illinois (cult.); JF437178; JF437064; AB234997. Ampelopsis delavayana Planch.
ex Franch.: J. Wen 9377; China, Guangxi; JF437179; JF437065; JF437287. Ampelopsis denudata Planch.: J. Wen 8699; Mexico, Chiapas; JF437180; JF437066;
JF437288. Ampelopsis glandulosa (Wall.) Momiy. var. hancei (Planch.) Momiy.: J. Wen 9402; China, Taiwan; JF437183; JF437069; JF437291. Ampelopsis
glandulosa (Wall.) Momiy. var. kulingensis(Rehder) Momiy.: J. Wen 9283; China, Hunan; JF437182; JF437068; JF437290. Ampelopsis glandulosa (Wall.)
Momiy.: J. Wen 9380; China, Guangxi; JF437181; JF437067; JF437289. Ampelopsis grossedentata (Hand.-Mazz.) W.T. Wang: H. Ren 55072; China, Yunnan;
JF437184; JF437070; JF437292. Ampelopsis japonica (Thunb.) Makino: H. Ren 55207; China, Guangdong; JF437185; JF437071; –. Ampelopsis rubifolia (Wall.)
Planch.: J. Wen 9285; China, Hunan; JF437186; JF437072; JF437293. Cayratia corniculata (Benth.) Gagnep.: J. Wen 9461; China, Taiwan; JF437188; JF437074;
–. Cayratia debilis (Baker) Suess.: Carvalho 3459; Africa; JF437189; JF437075; JF437295. Cayratia debilis (Baker) Suess.: Carvalho 4136; Africa; JF437190;
JF437076; JF437296. Cayratia gracilis (Guill. & Perr.) Suess.: 5828; Africa; JF437191; JF437077; JF437297. Cayratia japonica (Thunb.) Gagnep.: J. Wen 8330;
Malaysia, Selangor; JF437192; JF437078; JF437298. Cayratia japonica (Thunb.) Gagnep.: J. Wen 6140; Vietnam, Lao Cai; JF437196; JF437082; AB235009.
Cayratia japonica (Thunb.) Gagnep.: J. Wen 9262; China, Sichuan; JF437197; JF437083; JF437300. Cayratia japonica (Thunb.) Gagnep.: J. Wen 9263; China,
Sichuan; JF437198; JF437084; JF437301. Cayratia maritima Jackes: J. Wen 9403; China, Taiwan; JF437193; JF437079; JF437299. Cayratia trifolia (L.) Domin:
H. Ren 55095; China, Yunnan; JF437194; JF437080; –. Cayratia trifolia (L.) Domin: H. Ren 55101; China, Yunnan; JF437195; JF437081; –. Cissus albiporcata
Masinde & L.E. Newton: Luke & Luke 11456; Kenya, Chyulu Plains; JF437201; JF437087; JF437304. Cissus aralioides Planch.: Aplin 19870062; Belgium,
National Botanical Garden (cult.); JF437202; JF437088; JF437305. Cissus assamica (M.A. Lawson) Craib: J. Wen 9406; China, Taiwan; JF437204; JF437090;
JF437307. Cissus assamica (M.A. Lawson) Craib: Z.-L. Nie & Y. Meng 362; China, Guizhou; JF437203; JF437089; JF437306. Cissus cornifolia (Baker) Planch.:
Luke & Luke 11452; Kenya, Nr KWS Rhino Camp.; JF437205; JF437091; JF437308. Cissus discolor Blume: 20061111; Belgium, National Botanical Garden
(cult.); JF437206; JF437092; JF437309. Cissus erosa Rich.: J. Wen 8574; Peru; JF437207; JF437093; JF437310. Cissus incisa Des Moul.: J. Wen 7287; U.S.A.,
Texas; JF437208; JF437094; AB235014. Cissus phymatocarpa Masinde & L.E. Newton: Luke & Luke 11474; Kenya, Diani Forest; JF437209; JF437095; JF437311.
Cissus producta Afzel.: Luke & al. 11528; Tanzania, Udzungwa Mountain; JF437210; JF437096; JF437312. Cissus quadrangularis L.: J. Wen 7368; Thailand,
Chiangmai (cult.); JF437211; JF437097; JF437313. Cissus rotundifolia (Forssk.) Vahl: Luke & Luke 11478; Kenya, Taru; JF437212; JF437098; JF437314. Cissus
rotundifolia (Forssk.) Vahl: Luke & Luke 11458; Kenya, Merueshi; JF437213; JF437099; JF437315. Cissus sciaphila Gilg: Luke & Luke 11477; Kenya, Shimba
Hills; JF437214; JF437100; JF437316. Cissus sicyoides L.: J. Wen 8734; Mexico; JF437215; JF437101; JF437317. Cissus sp.: M. Nee & J. Wen 53919; Bolivia,
Santa Cruz; JF437199; JF437085; JF437302. Cissus sp.: J. Wen 8738; Mexico, Chiapas; JF437200; JF437086; JF437303. Cissus striata Ruiz & Pav.: J. Wen 7355;
Chile; –; JF437104; JF437319. Cissus subtetragona Planch.: H. Ren 55110; China, Yunnan; JF437216; JF437102; –. Cissus trothae Gilg & M. Brandt: Luke & al.
11537; Tanzania, Udzungwa Mountain; JF437217; JF437103; JF437318. Cyphostemma cyphopetalum (Fresen.)Wild & R.B. Drumm.: Luke & Luke 11451; Kenya,
Nr KWS Rhino Camp.; JF437221; JF437108; JF437323. Cyphostemma duparquetii (Planch.) Desc.: Luke & al. 11534; Kenya, Udzungwa Mountain; JF437222;
JF437109; JF437324. Cyphostemma dysocarpum (Gilg & M. Brandt) Desc.: Luke & Luke 11457; Kenya, Chyulu Plains; JF437223; JF437110; JF437325. Cyphostemma heterotrichum (Gilg & R.E. Fr.) Desc. ex Wild & R.B. Drumm.: L. Lovett 4027; Tanzania; JF437224; JF437111; JF437326. Cyphostemma kibweziense
Verdc.: Luke & Luke 11481; Kenya, Mbinzau; JF437229; JF437116; JF437330. Cyphostemma kilimandscharicum (Gilg) Wild & R.B. Drumm.: Luke & Luke
11469; Kenya, Chyulu Hills; JF437225; JF437112; JF437327. Cyphostemma kirkianum (Planch.) Wild & R.B. Drumm: Luke & Luke 11473; Kenya, Diani Forest;
JF437226; JF437113; JF437328. Cyphostemma maranguense (Gilg) Desc.: Luke & Luke 11468; Kenya, Chyulu Hills; JF437227; JF437114; JF437329. Cyphostemma montagnacii Desc.: J. Wen 6672; U.S.A., Missouri Botanical Garden (cult); JF437228; JF437115; AB235027. Cyphostemma sp.: R.G.6814; Africa;
JF437219; JF437106; JF437321. Cyphostemma sp.: R.G. 6878; Africa; JF437220; JF437107; JF437322. Cyphostemma sp.: Luke 11552; Kenya, Nairobi; JF437218;
JF437105; JF437320. Cyphostemma thomasii (Gilg & M. Brandt) Desc.: Luke & Luke 11448; Kenya, Makindu; JF437230; JF437117; JF437331. Cyphostemma
vogelli (Hook.) Desc.: 4127; Africa; JF437231; JF437118; JF437332. Cyphostemma zimmermannii Verdc.: Luke & Luke 11476; Kenya, Shimba Hills; JF437232;
JF437119; JF437333. Leea aequata L.: J. Wen 8382; Malaysia, Perak; JF437233; JF437120; –. Leea guineensis G. Don: J. Wen 8250; Philippines, Laguna;
JF437234; JF437121; –. Leea guineensis G. Don: J. Wen 9408; China, Taiwan; JF437235; JF437122; –. Leea indica Merr.: J. Wen 8341; Malaysia; JF437236;
JF437123; JF437334. Leea macrophylla Roxb. ex Hornem. & Roxb.: H. Ren 55105; China, Yunnan; JF437237; JF437124; JF437335. Leea rubra Blume: MAC
05-716; Thailand, Sai Yok; JF437238; JF437125; –. Nothocissus spicifera (Griff.) Latiff: J. Wen 8384; Malaysia, Perak; JF437239; JF437126; JF437336. Parthenocissus chinensis C.L. Li: Z.-L. Nie & Y. Meng 455; China, Sichuan; JF437240; JF437127; HM223263. Parthenocissus chinensis C.L. Li: J. Wen 6530; China,
Yunnan; JF437241; JF437128; HM223278. Parthenocissus dalzielii Gagnep.: J. Wen 9325; China, Hunan; JF437242; JF437129; JF437337. Parthenocissus
dalzielii Gagnep.: J. Wen 9372; China, Hunan; JF437243; JF437130; JF437338. Parthenocissus henryana (Hemsl.) Graebn. ex Diels & Gilg: Z.-L. Nie & Y. Meng
359; China, Guizhou; JF437244; JF437131; HM223272. Parthenocissus laetevirens Rehder: J. Wen 9379; China, Guangxi; JF437245; JF437132; JF437339.
Parthenocissus quinquefolia (L.) Planch.: J. Wen 8684; Mexico, Oaxaca (cult.); JF437246; JF437133; HM223275. Parthenocissus suberosa Hand.-Mazz.: Z.-L.
Nie & Y. Meng 358; China, Guizhou; JF437247; JF437134; HM223273. Parthenocissus tricuspidata (Sieb. & Zucc.) Planch.: Z.-L. Nie & Y. Meng 355; China,
Guizhou; JF437248; JF437135; HM223274. Parthenocissus vitacea (Knerr) Hitchc.: J. Wen 7234; U.S.A., Texas; JF437249; JF437136; JF437340. Pterisanthes
stonei Latiff: J. Wen 8346; Malaysia, Selangor; –; JF437137; AB235046. Rhoicissus tomentosa (Lam.) Wild & R.B. Drumm.: 19656252; Belgium, National
Botanical Garden (cult.); JF437251; JF437139; JF437342. Rhoicissus tridentata (L.f.) Wild & R.B. Drumm.: Luke & Luke 11453; Kenya, Chyulu Hills; JF437250;
JF437138; JF437341. Tetrastigma bioritsense (Hayata) Hsu & Kuoh: J. Wen 9451; China, Taiwan; JF437252; JF437140; HM585964. Tetrastigma erubescens
Planch.: H. Ren 55116; China, Yunnan; JF437253; JF437141; JF437343. Tetrastigma garrettii Gagnep.: N.P. Pui s.n.; Thailand, Chiang Mai; JF437254; JF437142;
JF437344. Tetrastigma hemsleyanum Diels & Gilg: Z.-L. Nie & Y. Meng 451; China, Sichuan; JF437255; JF437143; HM586000. Tetrastigma jinghongense C.L.
Li: J. Wen 8471; China, Yunnan; JF437256; JF437144; HM586006. Tetrastigma lanyuense C.E. Chang: J. Wen 9404; China, Taiwan; JF437257; JF437145;
HM586009. Tetrastigma obtectum (Wall.) Planch.: J. Wen 9121; China, Yunnan; JF437258; JF437146; JF437345. Tetrastigma obtectum (Wall.) Planch.: Z.-L.
Nie & Y. Meng 454; China, Sichuan; JF437266; JF437154; HM585751. Tetrastigma pachyphyllum (Hemsl.) Chun: J. Wen 8319; Philippines, Ifugao; JF437259;
JF437147; HM586032. Tetrastigma planicaule Gagnep.: H. Ren 55071; China, Yunnan; JF437260; JF437148; JF437346. Tetrastigma serrulatum Planch.: Z.-L.
Nie & Y. Meng 445; China, Yunnan; JF437261; JF437149; HM586042. Tetrastigma siamense Gagnep. & Craib: 03-439; Thailand, Bahng Mah Pah District;
JF437262; JF437150; JF437347. Tetrastigma sp.: J. Wen 5983; Vietnam, Lao Cai; JF437187; JF437073; JF437294. Tetrastigma sp.: J. Wen 8370; Philippines;
JF437268; JF437156; JF437351. Tetrastigma triphyllum (Gagnep.) W.T. Wang: J. Wen 9051; China, Yunnan; JF437264; JF437152; JF437348. Tetrastigma triphyllum (Gagnep.) W.T. Wang: Z.-L. Nie & Y. Meng 342; China, Yunnan; JF437263; JF437151; HM586061. Tetrastigma xishuangbannaense C.L. Li: H. Ren 55108;
China, Yunnan; JF437265; JF437153; –. Tetrastigma yunnanense Gagnep.: J. Wen 9143; China, Yunnan; JF437267; JF437155; JF437350. Vitis betulifolia Diels
& Gilg: J. Wen 9308; China, Hunan; JF437269; JF437157; JF437352. Vitis chunganensis Hu: J. Wen 9305; China, Hunan; JF437271; JF437159; JF437353. Vitis
heyneana Roem. & Schult: J. Wen 9042; China, Yunnan; JF437272; JF437160; –. Vitis heyneana Roem. & Schult: J. Wen 9378; China, Guangxi; JF437273;
JF437161; JF437354. Vitis lanata Roxb.: J. Wen 9184; China, Tibet; JF437274; JF437162; JF437355. Vitis lanata Roxb.: J. Wen 9197; China, Tibet; JF437275;
JF437163; JF437356. Vitis mengziensis C.L. Li: Z.-L. Nie & Y. Meng 415; China, Yunnan; JF437270; JF437158; HM223276. Vitis popenoei J.L. Fennell: J. Wen
8724; Mexico, Chiapas; JF437276; JF437164; HM586072. Vitis riparia Michx.: J. Wen 8658; U.S.A., Virginia; JF437277; JF437165; JF437357. Vitis rotundifolia
Michx.: J. Wen 11087; U.S.A., Arkansas; –; JF437166; JF437358. Vitis sp.: Z.-L. Nie & Y. Meng 372; China, Guizhou; JF437280; JF437169; JF437360. Vitis
thunbergii Sieb. & Zucc.: J. Wen 9446; China, Taiwan; JF437278; JF437167; AB235082. Vitis tilifolia Humb. & Bonpl.: J. Wen 8713; Mexico, Chiapas; JF437279;
JF437168; JF437359. Yua austro-orientalis (F.P. Metcalf) C.L. Li: S. Ickert-Bond1313; China, Guangdong; –; JF437170; AB235085. Yua thomsoni (M.A. Lawson) C.L. Li: Z.-L. Nie & Y. Meng 469; China, Sichuan; –; JF437171; HM223277.
637
View publication stats