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Molecular phylogeny of the endemic fern genera Cyrtomidictyum and Cyrtogonellum (Dryopteridaceae) from East Asia

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Abstract

Cyrtomidictyum Ching and Cyrtogonellum Ching are two eastern Asian endemic genera whose taxonomic affinities and phylogenetic relationships have long been controversial. The main uncertainty surrounds the separation of the two genera from the species-rich genus Polystichum. Here we present a phylogenetic study focusing on the phylogenetic relationships of these polystichoid ferns. We reconstructed the relationships based on DNA sequence variation in four chloroplast genome regions, rbcL, atpB, and the intergenic spacers (IGS) rps4-trnS and trnL-trnF. Maximum likelihood and Bayesian inference analyses confirm earlier results that were based on less comprehensive taxon sampling and either only a single gene (rbcL) or two IGS (rps4-trnS and trnL-trnF). Cyrtomidictyum is the sister of the clade of polystichoid ferns that includes Cyrtogonellum, Cyrtomium subser. Balansana and three sections of Polystichum. Cyrtogonellum groups with several species of Polystichum, and constitutes the sister taxon to Polystichum sect. Sphaenopolystichum. We support the recognition of Cyrtomidictyum as circumscribed initially, rather than expansion of the genus to include either several Polystichum species or Cyrtogonellum, some Polystichum and Cyrtomium species. The monophyly of Cyrtomidictyum is supported by morphological characters such as once-pinnate leaves, free venation, prolongated leaf apices, and exindusiate sori. Two synapomorphic indels in the chloroplast genome, one 15-bp deletion in rps4-trnS, and one 3-bp insertion in trnL-trnF further differentiate Cyrtomidictyum from other polystichoid ferns. The close affinity of Cyrtogonellum to section Sphaenopolystichum of Polystichum s.s. is highly supported by molecular data. However, no shared morphological characters or molecular indels have been detected, although the distinctness of Cyrtogonellum is shown by a 13-bp insertion in the rps4-trnS alignment.

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References

  • Chen, Z. D., Wang, X. Q., Sun, H. Y., Han, Y., Zhang, Z. X., Zou, Y. P., et al. (1998). Systematic position of the Rhoipteleaceae: evidence from nucleotide sequences of the rbcL gene. Acta Phytotaxonomica Sinica, 36, 1–7.

    Google Scholar 

  • Ching, R. C. (1938). A revision of the Chinese and Sikkim-Himalayan Dryopteris with reference to some species from neighbouring regions. Bulletin of the Fan Memorial Institute of Biology/Botanical Series, 8, 327–331.

    Google Scholar 

  • Ching, R. C. (1940). The studies of Chinese ferns—XXXIII. Bulletin of the Fan Memorial Institute of Biology/Botanical Series, 8, 173–184.

    Google Scholar 

  • Ching, R. C. (1957). Cyrtomidictyum Ching, a yet little known Chinese fern genus. Acta Phytotaxonomica Sinica, 6, 255–266.

    Google Scholar 

  • Ching, R. C. (1978). The Chinese fern families and genera: systematic arrangement and historical origin. Acta Phytotaxonomica Sinica, 16(3), 1–19. 16(4), 16–37.

    Google Scholar 

  • Copeland, E. B. (1947). Genera filicum. The genera of ferns. Waltham: Chronia Botanica Company.

    Google Scholar 

  • Doyle, J. J., & Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11–15.

    Google Scholar 

  • Gastony, G. J., & Rollo, D. R. (1995). Phylogeny and generic circumscriptions of cheilanthoid ferns (Pteridaceae: Cheilanthoideae) inferred from rbcL nucleotide sequences. American Fern Journal, 85, 341–360.

    Article  Google Scholar 

  • Geiger, J. M., & Ranker, T. A. (2005). Molecular phylogenetics and historic biogeography of Hawaiian Dryopteris (Dryopteridaceae). Molecular Phylogenetics and Evolution, 34, 392–407.

    Article  CAS  PubMed  Google Scholar 

  • Guindon, S., & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696–704.

    Article  PubMed  Google Scholar 

  • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.

    CAS  Google Scholar 

  • Hasebe, M., Wolf, P. G., Pryer, K. M., Ueda, K., Ito, M., Sano, R., et al. (1995). Fern phylogeny based on rbcL nucleotide sequences. American Fern Journal, 85, 134–181.

    Article  Google Scholar 

  • Kramer, K. U., Holttum, R. E., Moran, R. C., & Smith, A. R. (1990). Dryopteridaceae. In K. Kubitzki (Ed.), The families and genera of vascular plants (pp. 99–144). Berlin: Springer-Verlag.

    Google Scholar 

  • Kung, H. S., Chu, W. M., He, Z. R., & Zhang, L. B. (2001). Polystichum. In H. S. Kung (Ed.), Flora reipublicae popularis sinicae (pp. 1–177). Beijing: Science.

    Google Scholar 

  • Li, C. X., & Lu, S. G. (2006). Phylogenetic analysis of Dryopteridaceae based on chloroplast rbcL sequences. Acta Phytotaxonomica Sinica, 44, 503–515.

    Article  Google Scholar 

  • Li, C. X., Lu, S. G., & Yang, Q. (2004). Asian origin for Polystichum (Dryopteridaceae) based on rbcL sequences. Chinese Science Bulletin, 49, 1146–1150.

    Article  CAS  Google Scholar 

  • Li, C. X., Lu, S. G., & Barrington, D. S. (2008). Phylogeny of Chinese Polystichum (Dryopteridaceae) based on chloroplast DNA sequence data (trnL-F and rps4-trnS). Journal of Plant Research, 121, 19–26.

    Article  CAS  PubMed  Google Scholar 

  • Little, D. P., & Barrington, D. S. (2003). Major evolutionary events in the origin and diversification of the fern genus Polystichum (Dryopteridaceae). American Journal of Botany, 90, 508–514.

    Article  Google Scholar 

  • Liu, H. M., Zhang, X. C., Chen, Z. D., & Qiu, Y. L. (2007a). Inclusion of the eastern Asia endemic genus Sorolepidium in Polystichum (Dryopteridaceae): evidence from the chloroplast rbcL gene and morphological characteristics. Chinese Science Bulletin, 52, 631–638.

    Article  CAS  Google Scholar 

  • Liu, H. M., Zhang, X. C., Wang, W., Qiu, Y. L., & Chen, Z. D. (2007b). Molecular phylogeny of the fern family Dryopteridaceae inferred from chloroplast rbcL and atpB genes. International Journal of Plant Sciences, 689, 1311–1323.

    Article  Google Scholar 

  • Lu, J. M., Li, D. Z., Gao, L. M., Cheng, X., & Wu, D. (2005). Paraphyly of Cyrtomium (Dryopteridaceae): evidence from rbcL and trnL-F sequences data. Journal of Plant Research, 118, 129–135.

    Article  PubMed  Google Scholar 

  • Lu, J. M., Barrington, D. S., & Li, D. Z. (2007). Molecular phylogeny of the polystichoid ferns in Asia based on rbcL sequences. Systematic Botany, 32, 26–33.

    Article  Google Scholar 

  • Pichi Sermolli, R. E. G. (1977). Tentamen pteridophytorum genera in taxonomicum ordinem redigendi. Webbia, 31, 313–512.

    Google Scholar 

  • Posada, D., & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817–818.

    Article  CAS  PubMed  Google Scholar 

  • Ronquist, F., & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574.

    Article  CAS  PubMed  Google Scholar 

  • Schneider, H., Smith, A. R., Cranfill, R., Haufler, C. H., Ranker, T. A., & Hildebrand, T. (2002). Gymnogrammitis dareiformis is a polygrammoid fern (Polypodiaceae)—resolving an apparent conflict between morphological and molecular data. Plant Systematics and Evolution, 234, 121–136.

    Article  Google Scholar 

  • Taberlet, P., Gielly, L., Pautou, G., & Bouvet, J. (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105–1109.

    Article  CAS  PubMed  Google Scholar 

  • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., & Higgins, D. G. (1997). The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876–4882.

    Article  Google Scholar 

  • Thomson, J. A., Chikuni, A. C., & McMaster, C. S. (2005). The taxonomic status and relationships of bracken ferns (Pteridium: Dennstaedtiaceae) from sub-Saharan Africa. Botanical Journal of the Linnean Society, 148, 311–321.

    Article  Google Scholar 

  • Tryon, A. F., & Lugardon, B. (1991). Spores of the Pteridophyta. New York: Springer-Verlag.

    Google Scholar 

  • Tryon, R. M., & Tryon, A. F. (1982). Ferns and allied plants, with special reference to tropical America. New York: Springer-Verlag.

    Google Scholar 

  • Wu, S. H., & Ching, R. C. (1991). Fern families and genera of China. Beijing: Science.

    Google Scholar 

  • Wu, S. G., Xiang, J. Y., & Phan, K. L. (2005). Some new records of ferns from Vietnam (1). Acta Botanica Yunnanica, 27, 249–252.

    CAS  Google Scholar 

  • Xie, Y. T. (1990). Classification and distribution of Cyrtogonellum Ching. Bulletin of Botanical Research, 10, 93–97.

    Google Scholar 

Download references

Acknowledgements

We sincerely thank Changhan Li, Xiaoxia Wang, Hao Zhang and Yongle Chen for providing plant materials of Cyrtomidictyum, and Dr. Harald Schneider and an anonymous reviewer for their suggestions and comments. We are grateful to Prof. Joachim W. Kadereit for corrections and comments on this paper. This research was supported by the China Postdoctoral Science Foundation Fund Project (No. 20080430259), the National Natural Science Foundation of China (No. 30470139 and 30770166), and by Shen Zhen Bureau of Science and Information of China.

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Correspondence to Hui Zeng.

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Liu, HM., Zhang, XC., Wang, W. et al. Molecular phylogeny of the endemic fern genera Cyrtomidictyum and Cyrtogonellum (Dryopteridaceae) from East Asia. Org Divers Evol 10, 57–68 (2010). https://doi.org/10.1007/s13127-010-0010-6

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