Skip to main content
Log in

Molecular (ISSR, cp DNA, ITS) and morphological study of the genus Tragopogon L. (Asteraceae)

  • Research Article
  • Published:
Genetic Resources and Crop Evolution Aims and scope Submit manuscript

Abstract

Tragopogon is an Old World genus with 150 species. Mediterranean, Middle East, and Eastern Europe are the distribution centers of this genus. This genus has 26 species in Iran, of which 11 are endemic. The morphology studies of 32 species and Molecular studies (ISSR, ITS, cp DNA) of 22 species of the genus Tragopogon were investigated. Despite the anatomical and molecular studies done around the world, the exact classification of this genus is not clear due to the high number of secret species, hybridization, polyploidy, and rapid diversification. The purpose of these studies is to classify, determine interspecific relationship in this genus, and determine the important morphological characteristics in taxon differentiation. We conclude that sections of Rubriflori, Sosnowskya, Chromopappus, Majores, Angustissimi, and Krascheninnikovia introduced by the flora of Iranica are confirmed by our morphometry and molecular studies. Section of Profundisulcati in flora Iranica is confirmed based on morphometry data. The Species of T. jesdianus, T. porphyrocephalus, T. rezaiyensis, and T. Stroterocarpus in the flora of Iranica are not classified in any section which we classified in the Rubriflori section. Cp DNA dendrogram is not useful for classification in this genus and Chloroplast sequences are very similar among Tragopogon species. Therefore, the use of cp DNA markers in the classification of this genus is not recommended. The use of ISSR and ITS molecular markers are useful for classifying the genus Tragopogon.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Azizi H, Sheidai M, Mozaffarian V, Noormohammadi Z (2021) Pollen morphology of the genus Tragopogon (Asteraceae). Acta Bot Hung 63(1–2):31–43. https://doi.org/10.1556/034.63.2021.1-2.2

    Article  Google Scholar 

  • Bell CD, Mavrodiev EV, Soltis PS, Calaminus AK, Albach DC, Cellinese N, Garcia-Jacas N, Soltis DE (2012) Rapid diversification of Tragopogon and ecological associates in Eurasia. J Evol Biol 25:2470–2480. https://doi.org/10.1111/j.1420-9101.2012.02616.x

    Article  CAS  PubMed  Google Scholar 

  • Blanca G, Diazdela Guardia C (1997) Fruit morphology in Tragopogon L. (Compositae: Lactuceae) from the Iberian Peninsula. Bot J Linn 125:319–329

    Google Scholar 

  • Borisova AG (1964). Tragopogon L. In: Bobrov EG, Tzvelev NN (eds) Flora of USSR Compositae Tribe Cichorieae, vol.29. Smithsonian Institution Libraries, Washington D.C., pp 115–196

  • Bremer K (1994) Asteraceae: cladistics and classification. Timber Press, Portland

    Google Scholar 

  • Buggs RJA, Soltis PS, Mavrodiev EV, Symonds VV, Soltis DE (2008) Does phylogenetic distance between parental genomes govern the success of polyploids. Castanea 73(2):74–93. https://doi.org/10.2179/0008-7475

    Article  Google Scholar 

  • Coskuncelebil K, Gultepe M, Guzel ME, Makbul S (2020) Tragopogon abbreviatus (Asteraceae): a little-known species inferred from morphological and molecular analysis. Turk J Bot 44:269–280. https://doi.org/10.3906/bot-1911-38

    Article  CAS  Google Scholar 

  • Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7:574–578

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hamer Q, Harper DA, Rayan PD (2012) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:9

    Google Scholar 

  • Hatami E, Mirtadzadini M, Bordbar F, Jones KE (2020) Delimitation of Iranian species of scrozonera subg. podospermum and S. subg. Pseudopodospermum (Asteraceae, Cichorieae) based on morphological and molecular data. Willdenomia 50:39–63

    Article  Google Scholar 

  • Kashin AS, Berezutsky MA, Kochanova IS, Dobrynicheva NV, Polyanskaya MV (2007) Pecularities of seed reproduction in populations of Asteraceae species under impact of anthropogenic factors. Botanicheskiy Zhurnal 92(9):1408–1427 ((In Russian))

    Google Scholar 

  • Mavrodiev EV, Edwards CE, Albach DC, Gitzendanner A, Soltis PS, Soltis DE (2004) Phylogenetic relationships in subtribe Scorzonerinae (Asteraceae: Cichorioideae: Cichorieae) based on ITS sequence data. Taxon 3:699–712

    Article  Google Scholar 

  • Mavrodiev EV, Tancig M, Sherwood AM, Gitzendanner MA, Rocca J, Soltis PS, Soltis DE (2005) Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequencedata. Int J Plant Sci 166:117–133

    Article  CAS  Google Scholar 

  • Mavrodiev EV, Soltis PS, Soltis DE (2008a) Putative parentage of six Old World polyploids in Tragopogon L. (Asteraceae: Scorzonerinae) based on ITS, ETS and plastid sequence data. Taxon 57:1215–1232

    Article  Google Scholar 

  • Mavrodiev EV, Nawchoo I, Soltis PS, Soltis DE (2008b) Molecular data reveal that the tetraploid Tragopogon kashmirianus (Asteraceae: Lactuceae) is distinct from the North American T. mirus. Bot J Linn 158:391–398

    Article  Google Scholar 

  • Mavrodiev EV, Albach DC, Speranza P (2008c) A new polyploid species of the genus Tragopogon (Asteraceae, Cichorieae) from Russia. Novon 18:229–232

    Article  Google Scholar 

  • Mavrodiev EV, Gitzendanner M, Calaminus AK, Baldini RM, Soltis PS, Soltis DE (2012) Molecular phylogeny of Tragopogon L. (Asteraceae) using seven nuclear regions (Adh, GapC, LFY,PI, ITS, ETS and AP3). Webbia 67(2):111–137

    Article  Google Scholar 

  • Ownbey M (1950) Natural hybridization and amphiploidy in the genus Tragopogon. Am J Bot 37(7):487–499. https://doi.org/10.2307/2438023

    Article  Google Scholar 

  • Ownbey M, McCollum GD (1953) Cytoplasmic inheritance and reciprocal amphiploidy in Tragopogon. Am J Bot 40:788–796. https://doi.org/10.2307/2438276

    Article  Google Scholar 

  • Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295

    Article  Google Scholar 

  • Pires JC, Lim KY, Kovarik A, Matyasek R, Boyd A, Leitch AR, Leitch IJ, Bennett MD, Soltis PS, Soltis DE (2004) Molecular cytogenetic analysis recently evolved Tragopogon (Asteraceae) allopolyploids reveal a karyotype that is additive of the diploid progenitors. Am J Bot 91:1022–1035. https://doi.org/10.3732/ajb.91.7.1022

    Article  CAS  PubMed  Google Scholar 

  • Podani J (2000) Introduction to the exploration of multivariate data. Backhuys Publ, Leiden

    Google Scholar 

  • Pritchard JK, Stephens M, Donnelly S (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rechinger KH (1977) Tragopogon. In: Rechinger KH (ed) Flora Iranica, Compositae II, Lactuceae. Osterreich: Akademische Druck- u. Verlagsanstalt

  • Richardson IBK (1976) Tragopogon. In: Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SA, Webb DA (eds) Flora Europaea, vol 4. Cambridge Univ. Press, Cambridge

    Google Scholar 

  • Safavi SR, Naseh Y, Jafari E, Tavakoli Z, Heidar N (1992) Flora Iran, (Asteraceae Tribe cichorieae). Research Institute of Forests and Rangelands, Tehran

    Google Scholar 

  • Schishkin BK, Bobrov EG (1961) Compositae Tragopogon in Komarov Flora URSS. Doon Scientific Translation co. 318, Chukhuwala, Dehra Dun, India, vol 29, pp 131–196

  • Shaw J, Lickey EB, Beck JB, Farmer SB, Lium W, Miller J, Siripun KC (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92:142–166

    Article  CAS  PubMed  Google Scholar 

  • Sheidai M, Zanganeh S, Haji- Ramezani R, Nouroozi M, Noormohammadi Z, Ghasemzadeh- Baraki S (2013) Genetic diversity and population structure in four Cirsium (Asteraceae) species. Biologia 68:384–397

    Article  Google Scholar 

  • Sheidai M, Afshar M, Keshavarzi M, Talebi SM, Noormohammadi Z, Shafaf T (2014) Genetic diversity and genome size variability in Linum austriacum (Lineaceae) populations. Biochem Syst Ecol 57:20–26

    Article  CAS  Google Scholar 

  • Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate JA et al (2004) Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparision. Bot J Linn 82(4):485–501. https://doi.org/10.1111/j.1095-8312.2004.00335.x

    Article  Google Scholar 

  • Sukhorukov AP, Nilova MV (2015) Carpology of the genus Tragopogon L. (Asteraceae). Phytotaxa 201(1):27–49. https://doi.org/10.11646/phytotaxa.201.1.2

    Article  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Timme R, Kuehl EJ, Boore JL, Jansen RK (2007) A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am J Bot 94:302–313

    Article  CAS  PubMed  Google Scholar 

  • White TJ, Bruns S, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols. Academic Press, London, pp 315–322

    Google Scholar 

Download references

Funding

The authors have not disclosed any funding.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hejraneh Azizi.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Azizi, H., Sheidai, M., Mozaffarian, V. et al. Molecular (ISSR, cp DNA, ITS) and morphological study of the genus Tragopogon L. (Asteraceae). Genet Resour Crop Evol 70, 505–524 (2023). https://doi.org/10.1007/s10722-022-01443-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10722-022-01443-1

Keywords

Navigation